Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1069 242 1e-59 seq1480 214 6e-51 seq3253 206 9e-49 seq3205 194 6e-45 seq3602 158 4e-34 seq5279 154 5e-33 >seq1069 Length=24382 Score = 242 bits (268), Expect = 1e-59 Identities = 625/940 (66%), Gaps = 39/940 (4%) Strand=Plus/Minus Query 33377 ATTTCTGAGTTGTCTGTAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGG 33436 ||||||| |||| ||| || ||| |||||||| || |||||||| | || | | Sbjct 12103 ATTTCTG--TTGTGCATAGAAGCGTGCTTCAGCTTCTGCTGGCGGGATGTTTCCAACGGA 12046 Query 33437 TTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGA 33496 || ||||| | || ||| ||||| ||||||||| || |||||||||||||| | Sbjct 12045 GGACAGGAGCCGCCGCTGATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCGACCGC 11986 Query 33497 TTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGAT 33556 ||||| ||||||| || | |||| | |||| ||| || ||||| || ||||| || Sbjct 11985 GTCCCTGTTTTTCCACGGCCCCTGCCGGTAGATCAATTCGGTTTTGTAAAGTCCGTTAAT 11926 Query 33557 CGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCC 33616 || || ||||| || ||||| ||| || || || ||||| || | | | ||| Sbjct 11925 GGTCTCTGCCAGGGCGTTGTCATAGGAATCCCCAACACTACCGACAGAAGCAACAAGGCC 11866 Query 33617 GGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATG 33676 || |||||||| | || ||||||||||| || |||||| | || | ||| ||||| Sbjct 11865 CGCTTCAGCCAGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCCGAATG 11806 Query 33677 ATGAATCAAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATC 33736 ||| ||| | || | | || || | | |||| || || || || || || Sbjct 11805 ATGGGTCACTTTTCCCT------CAGGCTGCCTCTGGCACAGAGCCTGCTCCAGGGCGTC 11752 Query 33737 CAGAACAAAGTCCG--TGGTCA-TCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGC 33793 ||| | ||||| | ||| || | ||||| ||| |||||||| ||||| |||||| Sbjct 11751 CAGCATGAAGTCGGTATGGGCAGTGGACGA---GACGCGCCAGCCCACAATCACGCGGGC 11695 Query 33794 GAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAA 33853 ||||| || || | ||| ||||| |||| |||| |||||||| || || || ||||| Sbjct 11694 AAACACATCAATGATGAAAGCCACATACACAAAGCCCTGCCATGTGGAAACGTAAGTAAA 11635 Query 33854 ATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAG 33913 |||||| ||||||||| || || ||| | ||||| || | || | ||| | Sbjct 11634 ATCCGAAACCCAGAGCCAGTTGGGGGCTGGAGCATGAAACTGGCGCTGCACCAGATCCTG 11575 Query 33914 CGGGCGCGG----CGCGG-TCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACT 33968 |||| ||| |||| ||| ||| || || | || | ||| || |||| Sbjct 11574 AGGGCACGGACGTTGCGGATCAGGCCGG-----GTGGTTCTGACGCCCTTGCCACGAATG 11520 Query 33969 GCGCCACGCAAGCCCTGCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATG 34028 |||| || ||| | | ||||||||| | ||||||||||| || | || || Sbjct 11519 ACGCCTTTCAGTCCCATCTGGCGCATCAACCGCTCTACCGTGCAGCGGGCGATAGTCCTG 11460 Query 34029 CCTTCCCGGTTCATCTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGC 34088 ||||| || | | ||| | ||||||||| || | || || || | || | | | Sbjct 11459 CCTTCGCGTCTGAGCTGATGCCAGACCTTACGCGCTCCATACACGCAGAAATTATCGTTC 11400 Query 34089 CAGACACGCTTGATCTCCGGTTGCAAAAGCTCATCGCGTTTC--GC-GCGGGCGCAGCGT 34145 || || | ||| || | || | ||||| | | |||| || ||| || || | Sbjct 11399 CATACCCTGCGGATTTC--ATCGC-ACAGCTCTTTGTCTTTCTGGCTGCGCGCACAAGGA 11343 Query 34146 TTCGACGGATCGCGAAGTTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAG 34205 || | | | || || | ||||| ||| | || || |||||| ||| | Sbjct 11342 TTTTTCTGCCTGGCAA--TG-GTTGCAT------AATAGACAGATGGCGCAATCGGCAGG 11292 Query 34206 ACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGG 34265 | ||||||||| | | |||| || | || | ||||||| ||||||||| || ||| | Sbjct 11291 ATCTTGCAGATTGACCCGACACCATATGTCTGCCGATGCTCCTCAATGAAGCCCGTCATG 11232 Query 34266 ACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGC 34305 | |||| ||||||||||| |||||||| || ||| |||| Sbjct 11231 GCCTGAACCGGCGGTCGAGTTCCGCCTGGGCAAAATACGC 11192 >seq1480 Length=1020 Score = 214 bits (236), Expect = 6e-51 Identities = 351/506 (69%), Gaps = 0/506 (0%) Strand=Plus/Minus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| |||||||| | ||||||| || ||| ||| || | | || |||||| Sbjct 696 TCGGCTTCGGCGGGCGGCCTGTAGCCGATTGGCGCCAGCAGGCGTCGGTTATTATACCAG 637 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGA 33524 | ||||||| || ||| || |||||| || | | |||||| || | | || Sbjct 636 TCCACCCATTTGAGGGTTTCCCATTCGACCTGCGCCATGGATTTCCATGGCCCCAGATGA 577 Query 33525 TGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTG 33584 || || | || | |||||| | ||||||||| || || ||||| ||||||||||||||| Sbjct 576 TGGATGACCTCGGCCTTGTATAAGCCGTTGATGGTCTCCGCCAGTGCATTGTCGTAGCTG 517 Query 33585 TCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGA 33644 || || |||||||||||| || ||| | ||| ||||| |||||| | || || Sbjct 516 TCACCAACAGTGCCGACTGAGGCGTCTATGTCAGCCAGCGCCAGGCGTTCGGTATATCGG 457 Query 33645 ATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGGT 33704 || | ||||| || || | ||| |||||||| |||| | | || | | || Sbjct 456 ATCGACAGATATTGTGATCCACGGTCCGAATGATGGATCAGCGCCTTGTTTCCCGCAGGC 397 Query 33705 TGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGAG 33764 | || | | || |||||||| || || || || || | |||||||| || | Sbjct 396 TTTCGTTGCCAGATGGCCTGTTCAAGGGCGTCGAGCACGAACTGGGTGGTCATGGAAGTC 337 Query 33765 CTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAGC 33824 ||| |||||| || || | |||||||||||| || || ||||| || || || | | Sbjct 336 GAGACTTTCCAGCCCACGATCCTGCGGGCGAACACATCAATGACGAACGCTACATAGACC 277 Query 33825 CAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGTCA 33884 ||| | ||| ||| |||||| ||||| ||||| ||||||||||| || || | || Sbjct 276 ATGCCATTCCAGGTCTGGACATAGGTAAAGTCCGAGACCCAGAGCTGGTTGGGGCTCTCG 217 Query 33885 GCCTTGAACTGCCGGTTGACTCGGTC 33910 ||| ||||||||||||||| | ||| Sbjct 216 GCCCGGAACTGCCGGTTGACCCTGTC 191 >seq3253 Length=25154 Score = 206 bits (228), Expect = 9e-49 Identities = 329/471 (70%), Gaps = 12/471 (3%) Strand=Plus/Plus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||| ||||| || || ||||| | || | | || ||||| ||| |||| || Sbjct 24351 GCCTCCGCTTCTGCTGGGGGGATGTTTCCAATGGAGGACAGGAGCCGCCGATTGTTGAAC 24410 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| || || |||||||| || | |||||| ||||||| || | || Sbjct 24411 CAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTTTTCCATGGCCCCTGC 24470 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 |||| || ||||| || ||||| || ||||| || || || || || ||||| || ||| Sbjct 24471 CGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCGAGGGCATTATCATAG 24530 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || ||| |||||||||| ||| || || |||||||| | || ||||| Sbjct 24531 GAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCCAGTCTTTGCGTGTAG 24590 Query 33642 CGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC 33701 |||||| || || ||| | || | || |||||||| ||| | || | | Sbjct 24591 CGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACTTTTCCCT------CA 24644 Query 33702 GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGT---GGTCATC 33758 ||||| | | |||| || || ||||| |||||||| || ||||| || || | | Sbjct 24645 GGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAAGTCGGTATGGGCCGTT 24704 Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACG 33818 || || ||| |||||||| ||||| ||||| ||||| || || | ||| || || Sbjct 24705 GATGA---GACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGATGAAGGCTACA 24761 Query 33819 TACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGC 33869 || | |||| ||||| || || ||||| ||||||||||| ||||||||| Sbjct 24762 TAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAGC 24812 >seq3205 Length=14997 Score = 194 bits (214), Expect = 6e-45 Identities = 301/429 (70%), Gaps = 12/429 (3%) Strand=Plus/Plus Query 33444 AGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTC 33503 ||||| ||| |||| ||||| ||||||||| || || |||||||| || | |||||| Sbjct 14236 AGCCGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTG 14295 Query 33504 GTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCG 33563 ||||||| || | |||||| || ||||| || ||||| || ||||| | || || Sbjct 14296 TTTTTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTATTGGTCTCC 14355 Query 33564 GCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCA 33623 || || ||||| || ||| || || ||| ||| |||||| ||| || || ||| Sbjct 14356 GCGAGGGCATTATCATAGGAATCTCCAACGCTTCCGTCTGAGGCAACGAGCCCCGCTTCA 14415 Query 33624 GCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATC 33683 ||||| | || ||||||||||| || || ||| | || | || |||||||| || Sbjct 14416 GCCAGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTC 14475 Query 33684 AAAGTCCCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACA 33743 | | || | | ||||| | | |||| || || ||||| |||||||| || Sbjct 14476 ACTTTTCCCT------CAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACG 14529 Query 33744 AAGTCCGT---GGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACG 33800 ||||| || || | | || || ||| |||||||| ||||| ||||| ||||| Sbjct 14530 AAGTCGGTATGGGCCGTTGATGA---GACACGCCAGCCCACAATGACCCGGGCAAACACA 14586 Query 33801 TCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGAC 33860 || || | ||| || || || | |||| ||||| || || ||||| ||||||||||| Sbjct 14587 TCAATGATGAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAA 14646 Query 33861 ACCCAGAGC 33869 ||||||||| Sbjct 14647 ACCCAGAGC 14655 >seq3602 Length=57791 Score = 158 bits (174), Expect = 4e-34 Identities = 317/469 (68%), Gaps = 7/469 (1%) Strand=Plus/Plus Query 33401 TGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTA 33460 |||||||||||| || |||||||| | || | | || ||||| ||| ||| | Sbjct 32202 TGCCTCAGCTTCTGCTGGCGGGATGTTTCCAATGGAGGACAGGAGCCGCCGATTATTGAA 32261 Query 33461 CCAGGCGACCCA-TTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGC 33519 |||| ||||||| || || |||||||| || || | |||||| ||||||| || | Sbjct 32262 CCAGTCGACCCAGTTTAAGTGTTGCCAGCTCAACAGCTTCCCTGTTTTTCCATGGTCCCT 32321 Query 33520 GCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGT 33579 |||| | |||| ||| | ||||| || ||||| || || || |||| || || || | Sbjct 32322 GCCGGTAGATCAATTCGATTTTGTAAAGTCCGTTAATGGTCTCCGCCAAAGCGTTATCAT 32381 Query 33580 AGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGT 33639 || || || || ||||| || | | | ||| || |||||||| | || ||| Sbjct 32382 AGGAATCCCCAACACTTCCGACAGAAGCAACAAGGCCCGCTTCAGCCAGTCTTTGCGTGT 32441 Query 33640 AGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGC 33699 |||||||| || |||||| | || | ||||||||| || ||| | || | Sbjct 32442 AGCGAATGGACACATATTGACATCCGCGGTCGGAATGGTGGGTCACTTTTCCCT------ 32495 Query 33700 CCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCG 33759 | || || | | |||| || || || || |||||||| || ||||| || || Sbjct 32496 CAGGCTGCCTCTGGCACAGAGCCTGCTCGAGGGCATCCAGCACGAAGTCGGTATGAGCCG 32555 Query 33760 ACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGT 33819 ||| ||| ||||| || |||||| || ||||| || || || | ||| | | | Sbjct 32556 TTGAGGAGACACGCCAACCCACAATAACCCGTGCGAATACATCAATGATGAAGACGAAAT 32615 Query 33820 ACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAG 33868 | | |||| ||||| || || |||||||| |||||||| ||||| || Sbjct 32616 AAACAAAGCCCTGCCAGGTGGAAACATACGTGAAATCCGAAACCCACAG 32664 >seq5279 Length=10060 Score = 154 bits (170), Expect = 5e-33 Identities = 274/399 (69%), Gaps = 12/399 (3%) Strand=Plus/Minus Query 33402 GCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTAC 33461 ||||| ||||| || || ||||| | || | | || ||||| ||| |||| || Sbjct 3423 GCCTCCGCTTCTGCTGGGGGGATGTTTCCAATGGAGGACAGGAGCCGCCGATTGTTGAAC 3364 Query 33462 CAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGC 33521 ||| ||||||||| || || |||||||| || | |||||| ||||||| || | || Sbjct 3363 CAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTTTTCCATGGCCCCTGC 3304 Query 33522 CGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAG 33581 |||| || ||||| || ||||| || ||||| || || || || || ||||| || ||| Sbjct 3303 CGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCGAGGGCATTATCATAG 3244 Query 33582 CTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAG 33641 || || ||| |||||||||| ||| || || |||||||| | || ||||| Sbjct 3243 GAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCCAGTCTTTGCGTGTAG 3184 Query 33642 CGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC 33701 |||||| || || ||| | || | || |||||||| ||| | || | | Sbjct 3183 CGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACTTTTCCCT------CA 3130 Query 33702 GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGT---GGTCATC 33758 ||||| | | |||| || || ||||| |||||||| || ||||| || || | | Sbjct 3129 GGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAAGTCGGTATGGGCCGTT 3070 Query 33759 GACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAAC 33797 || || ||| |||||||| ||||| ||||| ||| Sbjct 3069 GATGA---GACACGCCAGCCCACAATGACCCGGGCAAAC 3034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170660852985000