Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5218 446 2e-120 seq5403 165 1e-35 >seq5218 Length=3038582 Score = 446 bits (494), Expect = 2e-120 Identities = 1246/1888 (66%), Gaps = 38/1888 (2%) Strand=Plus/Minus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 |||||| | || || ||||||| || || || || || || | ||||||||||| Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| ||| ||||| || || || || ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||||||||| | || || || ||||| || || || || | ||||| || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 62272 |||||| || | | || || |||||||||| ||||| |||| |||| | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG---AC 2802658 Query 62273 ATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTACC-ATAATCCTATTCT 62328 | || ||||| | || |||| ||||||||||| || || || ||| ||||| Sbjct 2802657 CTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTCT 2802599 Query 62329 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTA 62388 | || ||||| | ||| || | ||| || ||| | || || | ||| |||| || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 62389 CTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62448 ||||||| || ||||| | ||| | | || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 62449 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62508 | || ||||| |||| |||||||||||| ||||| || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 62509 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 ||||||| || | | || |||| || || ||| || ||| | ||||||||| | Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTG-GCGTACGATCCTACA 62627 ||| | || || ||||| || |||||| || || |||| || Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGAC-TTCCTTCA 2802300 Query 62628 TATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAA 62687 || || ||||| | || ||| | | || |||| ||||| || || | || || | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 62688 TAAATGGTTTCAAAGATCTTCTTATTT-AGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746 ||||||||||||||||||| | ||| ||| || || ||| ||| || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATA 2802181 Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806 | | ||||| | |||||| || | || ||||| || || || ||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 62807 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62866 ||| || | | || || || | || ||| | || |||||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 62867 ATTTCT-GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCT- 62924 ||||| | || ||||| || ||||| || || || ||| || ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTG-TGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTG 2802002 Query 62925 --ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCAT 62982 | ||||||||||| | || | ||||||| ||| || || || | ||| | | Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 62983 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 63042 | || | | || || ||||| |||||||| || || || || || | || |||| Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 63043 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63102 | || |||||| ||| ||||| ||||| | || ||| | ||| | ||||| || | | Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 63103 GAGATTCTATAATCGCTTTCCA-GACGACTCGAGCCTTTA-TTATAGATTTGTATCTCCT 63160 | || || || || || ||| | |||| | || |||| | | |||| ||| Sbjct 2801821 GCGACTCAATGATGGCGAACCACAAGGACT-GTGCTTTTACAGTTCGGTTTGCGCGTCCC 2801763 Query 63161 TTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCT 63220 | || ||||||| ||| | ||| ||||| || ||||| |||| | | || Sbjct 2801762 TCCT-GTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| |||| | ||||| | | |||||| || | | ||| |||||||||||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 63281 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTG 63339 |||||| || ||||| || || ||| || | ||| | | || ||| || || || || | Sbjct 2801643 GAGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAG 2801585 Query 63340 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63399 ||||||| ||||| || || ||| | | || ||| |||||||| || || | || |||| Sbjct 2801584 TATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGG 2801525 Query 63400 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63459 | | |||| ||||| ||| || |||||||| | |||| || ||| ||| | | Sbjct 2801524 CAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGA 2801465 Query 63460 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCAC 63519 |||||| ||| |||| | ||| || || | || ||||| ||| | || | || Sbjct 2801464 CTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCT 2801405 Query 63520 TGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63575 | ||||||||| ||| || ||||| || || ||||| || ||||| | Sbjct 2801404 TTGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATG 2801349 Query 63576 GCGCATCGTTTTAACGTGTCAT--AGATGCCTTCTATGCTATCATCGATCATGTTAAGTA 63633 |||||| | | ||| || | | |||| || || || || ||||| | || | Sbjct 2801348 GCGCATTG-CTCAAC-TGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGA 2801291 Query 63634 GAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63693 ||||||| || | ||| ||||| | || | || ||||| || || ||||||| Sbjct 2801290 GAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGT 2801231 Query 63694 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63753 |||| || | || ||||| | ||||||||||| | || | || || || | Sbjct 2801230 GCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTC 2801171 Query 63754 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGT 63813 ||| ||||| | ||| || ||||| | ||||||||| |||| || | ||||| | Sbjct 2801170 CATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCAT 2801111 Query 63814 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63873 | ||||| | | ||| || |||| ||| || || ||||| |||||||| ||||| Sbjct 2801110 TGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGT 2801051 Query 63874 CTCGTTCGTAAATAATAACCGAATTGAG 63901 | || || ||||| ||| ||| || || Sbjct 2801050 CACGATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 165 bits (182), Expect = 1e-35 Identities = 365/545 (67%), Gaps = 3/545 (1%) Strand=Plus/Minus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || |||||||| || || ||||| || || | ||||| || || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| || || ||||| || ||||| || ||||| ||||| ||| ||||||||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATC 33761 || ||||| |||||||| || || | | ||||||| | ||| || | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 33762 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33821 || | |||||||||||||| || || ||||||||||| |||||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 33822 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33881 || || | | | |||| ||| ||||| ||||| | | ||| ||||| ||| Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 33882 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 33941 || || | |||||| ||||| || || || || || ||||| | |||||| || | ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 33942 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAA 34001 || || || || || || | | ||| || || || |||||||| || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 34002 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 34061 || |||| || || || || | ||| || | || | |||||| | Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTA 121568 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | ||| || || | ||||| || || |||||||| || || || || |||||| ||| Sbjct 121567 AGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAAATAA 121508 Query 34122 ATATT 34126 | ||| Sbjct 121507 AAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629774300040000