Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq5218 221 1e-52 >seq5218 Length=3038582 Score = 221 bits (244), Expect = 1e-52 Identities = 986/1537 (64%), Gaps = 46/1537 (3%) Strand=Plus/Minus Query 36823 TTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATA 36882 ||||| | || || |||||||| ||||| || || | |||| ||| ||||| || Sbjct 2802857 TTTGTGCGCAAGTAGTACATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATG 2802798 Query 36883 CTGGTCAGTTTTGCGTATGTAGGATTATCTATAT--ATATTGTCATTGATTGACTTTGAT 36940 || || ||| | || | || | | | || |||||| | || || || |||| Sbjct 2802797 GATGTGAGCTTTCCATAGTTTGGCTCTGCCACATGGATATTG--AAGGACTGGCTCTGAT 2802740 Query 36941 CTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAA 37000 ||||||||||||| | || || ||||||| | | |||| || || ||||||| Sbjct 2802739 CTATAAACGCACCGCGATCTGCGGCCATTTTAATTGTTGATTTAACTGAGATTTCCCAAA 2802680 Query 37001 CCGTTTTATATATTTGTTTTATATTATCTGGTA---AATCTAAATGTTGAATAGAACCAT 37057 | ||||| || | | | | || | ||| | | || | || |||||| || || Sbjct 2802679 CTGTTTTGTAAAGGTCTCGGACCTTTTGTGGAATTGATTCAATATTTTGAATGGATCCCC 2802620 Query 37058 TATGTAACACAATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATT-AGTTCT 37116 | | | || |||||| ||||||| | ||||| || | || | | || Sbjct 2802619 TGCTGGATATGATCTGATTCTTCATGTCATCGTCCCACAAATC-CAGCTCCGTCAAATCC 2802561 Query 37117 CTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATA 37176 |||| | || | || || || || || || ||||| | ||| | ||||||||| ||| Sbjct 2802560 CTCAGCAAATGATGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATA 2802501 Query 37177 TTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTA 37236 || | ||||| || || | ||| || ||||||| | ||||||| || ||||| || Sbjct 2802500 TTTGTTGTATAGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTG 2802441 Query 37237 GGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGT 37296 ||||| || || | | |||| ||||| | ||||||| | || || || || || Sbjct 2802440 GGCATCGGAGCCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGA 2802381 Query 37297 TCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCT 37356 | ||||| ||||| | |||||| || | || |||||| || || || ||||| || Sbjct 2802380 CCTTTCCAGTCCCAAAGATCTGTCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCC 2802321 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 ||||| | ||| | | ||| || ||||| | |||| ||| || ||||||||| Sbjct 2802320 TTACTGACCGGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAA 2802261 Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 || | ||| || || || | || || ||||| || || ||| ||||| | | || Sbjct 2802260 CTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCC 2802201 Query 37477 TCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCG 37536 || ||||| ||| | | ||| | || | || | | | ||||||| ||||||||| ||| Sbjct 2802200 TCCTCGCTTTCGTAGGGATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCG 2802141 Query 37537 ATACCTATGGGTCTATGTTTCTTATTAGA--TCTAGACGATTCTATCACTGGATAATAAT 37594 || || || || | ||| | ||| || ||| | | || || ||| ||| | | Sbjct 2802140 ATGCCAATAGGACGATGCCTTAAATTGGACTTCTTG--GCCTCCGGCAGTGGGTAAAAGT 2802083 Query 37595 TGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTG 37653 | ||||||||||| ||||| || ||| | | | | || || | | || || ||| Sbjct 2802082 TTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGA-CCTCCTTAAGCTTT 2802024 Query 37654 TCGAACATAAATACGTTAT-TAT----TAACAAATTTACTCAACGAAATAGATCCTAGAT 37708 | || | ||| ||| | | | | ||||| | | | | || ||| | | || Sbjct 2802023 TTGA--AGTCATATGTTTTCTCTGGCGTCACAAACATGTTGAGAGCGATCGATGCCAAAT 2801966 Query 37709 TACATACAGCAACTTCATCTTCGTTACTAA----ATTGTATAATCTCTGTACAGAGATTA 37764 | || || |||| || || ||| | || | | | ||| || || || |||||| Sbjct 2801965 TGCAAACTGCAA--TC-TCGTCG-GGCGAAGAGTACTCGACAATTTCCGTGCACAGATTA 2801910 Query 37765 CTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATAT 37824 || || |||| || |||| || ||| ||| ||| || || | || || | Sbjct 2801909 CTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAG 2801850 Query 37825 AGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA--ACTTC 37882 || || || || | || || | ||| | ||| || || | ||| || ||| Sbjct 2801849 AGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAAGGACT-- 2801792 Query 37883 TTGCTTTAAC-GATCGCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTA 37941 |||||| || | ||| ||| | || |||||||| | ||||| || | | Sbjct 2801791 GTGCTTTTACAGTTCGGTTT-GCGCGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCA 2801733 Query 37942 AAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCAT 38001 || |||| ||||| ||||| | ||| || |||| | ||||| | || ||||| Sbjct 2801732 AACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAG 2801673 Query 38002 TCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA 38061 || |||| || || |||| ||| || | ||| |||| ||| | ||| || ||| Sbjct 2801672 TCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAGAACAAA 2801613 Query 38062 TCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATAT 38120 || || || || ||||| || || |||| |||||||| | ||||| || || | Sbjct 2801612 TCACGGGCTCGATGCTCTTCCTTGCCAGTATTC-TTCTTAAGGTCCAGAAACTCAAAAAC 2801554 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 ||| | ||||| || |||| |||||| | | ||||| || | || |||| ||||| Sbjct 2801553 ATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTG 2801494 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || | ||||| | ||| ||| | | ||| | |||||| || | |||||| || | Sbjct 2801493 ATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGT 2801434 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAAT----C 38296 |||||| | ||| | || |||||||||| || || ||| || |||| | | Sbjct 2801433 GCCGTTGGTTCCGCAAATGGAAGTACCCTTTGCACGAATA----CAATGGACATTAAGAC 2801378 Query 38297 CTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 | || ||||||||| || || || | |||||||| Sbjct 2801377 CAATACCACCTGCAGACTTGGAGATCATGGCGCATTG 2801341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468492588920000