Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5218 475 5e-129 seq5403 129 8e-25 >seq5218 Length=3038582 Score = 475 bits (526), Expect = 5e-129 Identities = 1248/1886 (66%), Gaps = 34/1886 (2%) Strand=Plus/Minus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 |||||| | || || ||||||| || || || || || || | ||||||||||| Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| ||||| |||| ||| ||||| || || || || ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 ||||| | ||||||||| | || || || ||||| || || || || | ||||| || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 65065 |||||| || | | || || |||||||||| ||||| |||| |||| | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG---AC 2802658 Query 65066 ATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCC-ATAATCCTATTCT 65121 | || ||||| | || |||| ||||||||||| || ||| || ||| ||||| Sbjct 2802657 CTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTCT 2802599 Query 65122 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 65181 | || ||||| | ||| || | ||| || ||| | || || | ||| | || || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 65182 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 65241 |||| || || ||||| | ||| | | || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 65242 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 65301 | || ||||| |||| |||||||||||| ||||| || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 65302 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 65361 ||||||| || | | || |||| || || ||| || ||| | ||||||||| | Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 65362 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACA 65420 ||| || ||||| || |||||| | | || |||| || Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT-TCCTTCA 2802300 Query 65421 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 65480 || || || || | || ||| | | || ||||| ||||| || || | || || | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 65481 TAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 ||||||||||| ||||||| | |||| || || || ||| ||| || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATA 2802181 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | | ||||| | |||||| || | || ||||| || || || ||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 65600 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 65659 ||| || | | || || || | || ||| | || |||||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 65660 ATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA 65718 |||||| | | ||||| || ||||| || || || ||| || | ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTGTG-ACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTG 2802002 Query 65719 ---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 65775 | ||||||||||| | || | ||||||| ||| ||||| || | ||| | | Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 65776 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 65835 | || | | || || ||||| |||||||| || || ||||| || | || |||| Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 65836 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 65895 | || |||||| ||| ||||| ||||| | || ||| | ||| | ||||| || | | Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 65896 GAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCTT 65953 | || || || || || ||| | | ||| | || |||| | | |||| || Sbjct 2801821 GCGACTCAATGATGGCGAACCACAAGGACT-GTGCTTTTACAGTTCGGTTTGCGCGTCCC 2801763 Query 65954 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 66013 | || || ||||| ||| | ||| ||||| || ||||| |||| | | ||| Sbjct 2801762 TCCTGTT-CGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 66014 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 66073 ||| |||| | ||||| | | |||||| || | | ||| |||||||||||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 66074 GAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTG 66132 |||||| || ||||| || || ||| || ||||| | || || ||| || || || || | Sbjct 2801643 GAGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAG 2801585 Query 66133 TATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGG 66192 ||||||| ||||| || || ||| | | || ||| ||||||| || || | || |||| Sbjct 2801584 TATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGG 2801525 Query 66193 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 66252 | | |||| ||||| ||| || |||||||| | |||| || ||| ||| | | Sbjct 2801524 CAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGA 2801465 Query 66253 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 66312 |||||| ||| |||| | ||||||||| || || ||||| ||| | || | | || Sbjct 2801464 CTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCT 2801405 Query 66313 TTGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 ||||||||||| ||| || ||||| || || ||||| || ||||| | Sbjct 2801404 TTGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATG 2801349 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 |||||| | | | | | |||| ||||| || || ||||| | || ||| Sbjct 2801348 GCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGA 2801289 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 ||||| || | ||| ||||| | || | || ||||| || || ||||||||| Sbjct 2801288 AAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGC 2801229 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 66548 || || | || ||||| | ||||||||||| | || | || || || | | Sbjct 2801228 GTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCA 2801169 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 || ||||| | ||| || ||||| | ||||||||| |||| || |||| || || Sbjct 2801168 TGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATTG 2801109 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 ||||| | | ||| || |||| ||| || || ||||| |||||||| |||||| Sbjct 2801108 ATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTCA 2801049 Query 66669 CGTTCGTAAATAATAACCGAGTTGAG 66694 || || ||||| ||| |||||| || Sbjct 2801048 CGATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 129 bits (142), Expect = 8e-25 Identities = 357/545 (66%), Gaps = 3/545 (1%) Strand=Plus/Minus Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || || |||||||| || || ||||| || || | |||||||| || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||| || || ||||| || ||||| || ||||| || || || ||||| ||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCA--CTGTCATGT-ATC 36337 || ||||| || ||||| || || | | ||||||| | |||| || | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 36338 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 36397 || | |||||||||||||| || || ||||| || || || ||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 36398 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 36457 || || | | | |||| ||| || || || || | | ||| ||||| ||| Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 36458 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 36517 || || | |||||| ||||| ||||| || || || ||||| | |||||| || | ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 36518 ACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 36577 || || || || || || | | ||| || || || ||||| || || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 36578 AACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG 36637 || |||| || || || || | ||| | | || | |||||| | Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTA 121568 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 36697 | ||| || || | ||||| || || |||||||| || || || || |||||| ||| Sbjct 121567 AGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAAATAA 121508 Query 36698 ATATT 36702 | ||| Sbjct 121507 AAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127550620000