Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5200 145 7e-30 >seq5200 Length=2197361 Score = 145 bits (160), Expect = 7e-30 Identities = 203/283 (72%), Gaps = 10/283 (4%) Strand=Plus/Minus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || || ||||| || |||||| || | ||| |||| |||||| |||||||| || Sbjct 1469428 AGTGGCTCCACGTGATTTAGGTAAACATGCGTGTCTCCCATGGTGTGAACAAAGTCACCA 1469369 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || |||| || ||||| ||||| |||| ||| |||| ||||||||| ||| ||||| Sbjct 1469368 GGCTTCAGACCAGTGACATGAGCAATCATATAGGTCAACAGGGCGTAGGAGGCAATGTTG 1469309 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTC--TGGTACAGCTGGCAGGACAGCTC-- 21100 || || || || | |||||||||||| || || || |||||||||||||| || || Sbjct 1469308 AAGGGCACTCCCAAGCCCATGTCGGC--ACTTCGTTGATACAGCTGGCAGGAGAGTTCGC 1469251 Query 21101 ----CCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCG 21156 | || ||| || ||||||||| ||| ||| || || || | |||||| | Sbjct 1469250 CACGCTCCTGAGAGACATAAAACTGAGCCAAGCAGTGGCACGGGGGCAATGCCATCTTTG 1469191 Query 21157 CGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATC 21199 | |||| || |||||||| |||| | ||| || ||||| Sbjct 1469190 GAATGTCCAGCGGATTCCACGCCGACATGATGATACGTCGATC 1469148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427747325640000