Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5218 520 1e-142 seq5403 161 1e-34 >seq5218 Length=3038582 Score = 520 bits (576), Expect = 1e-142 Identities = 1261/1886 (67%), Gaps = 34/1886 (2%) Strand=Plus/Minus Query 78708 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 78767 |||||| | || || ||||||| || || || || || || | ||||||||||| Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 78768 CGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGG 78827 ||||| ||||| |||| ||||||||| || || || || ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 78828 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 78887 ||||| | ||||||||| | || || || ||||| || || || || | ||||| || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 78888 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 78944 |||||| || | | || || |||||||||| ||||| |||| |||| | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG---AC 2802658 Query 78945 ATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCC-ATAATCCTATTCT 79000 | || ||||| | || |||| ||||||||||| || ||| || ||| ||||| Sbjct 2802657 CTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTCT 2802599 Query 79001 TGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 79060 | || || || | ||| || | ||| || ||| | || || | ||| | || || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 79061 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCG 79120 |||| || || ||||| | ||| | | || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 79121 ATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAAC 79180 |||| ||||| |||| |||||||||||| ||||| || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 79181 TATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAG 79240 ||||||| || | | | |||| || || ||| || ||| ||||||||||| | Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 79241 ACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACT-AGCGTATGATCCTGTG 79299 ||| || ||| | || || || ||||| || ||||| | || | |||| Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT-TCCTTCA 2802300 Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| | || ||| ||| ||| | ||| ||||| || || | ||||| | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||||||||||| || |||| | || | || || || || | || || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCG-CTTTCGTAGGGATA 2802181 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | | ||||| | |||||| || | || ||||| || || || ||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 ||| || | | || || || | || ||| | || |||||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 79539 ATTCCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA 79597 || ||| | | ||||| || ||||| || || || ||| || | ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTGTG-ACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTG 2802002 Query 79598 ---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 | ||||||||||| | |||| ||||||| ||| ||||| || | ||| | | Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 | || | | ||||| ||||| || ||||| || |||||||| || | || |||| Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | || |||||| ||| ||||| ||||| | || ||| | ||| | ||||| || | | Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 79775 GAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GACTTGTATCTCTT 79832 | || || || || || ||| | | ||| | || |||| | | ||| || Sbjct 2801821 GCGACTCAATGATGGCGAACCACAAGGACT-GTGCTTTTACAGTTCGGTTTGCGCGTCCC 2801763 Query 79833 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCC 79892 | || || |||||| ||||| ||| ||||| || ||||| ||||| | | ||| Sbjct 2801762 TCCTGTT-CGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 79893 AGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAA 79952 ||| |||| || ||||| | | |||||| || ||| ||| ||||||||||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 79953 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 |||||| || ||||| || || ||| || | ||| | || || |||||| || || || | Sbjct 2801643 GAGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAG 2801585 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 ||||||| ||||| || || ||| | | || ||| |||||||| || || | || |||| Sbjct 2801584 TATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGG 2801525 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | ||||||| || ||| || |||||||| | |||| || ||| ||| | | Sbjct 2801524 CAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGA 2801465 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 |||||| ||| |||| | ||||||||| || || ||||| ||| | || | | || Sbjct 2801464 CTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCT 2801405 Query 80192 TGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 80247 | ||||||||| ||| || ||||| || || ||||| || ||||| | Sbjct 2801404 TTGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATG 2801349 Query 80248 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGA 80307 |||||| | | | | | |||| ||||| || || | ||||| | || ||| Sbjct 2801348 GCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGA 2801289 Query 80308 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 80367 ||||| || | ||| ||||| | || | || ||||| || || ||||||||| Sbjct 2801288 AAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGC 2801229 Query 80368 GTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGA 80427 || || | || || || | ||||||||||| | || | || || || | | Sbjct 2801228 GTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCA 2801169 Query 80428 TGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTT 80487 || ||||| | || || ||||| | ||||||||| |||| || |||| || ||| Sbjct 2801168 TGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATTG 2801109 Query 80488 ATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 80547 ||||| | | ||| || |||| ||| || || ||||| |||||||| |||||| Sbjct 2801108 ATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTCA 2801049 Query 80548 CGTTCGTAAATAATAACCGAGTTGAG 80573 || || ||||| ||| |||||| || Sbjct 2801048 CGATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 161 bits (178), Expect = 1e-34 Identities = 364/545 (67%), Gaps = 3/545 (1%) Strand=Plus/Minus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || || |||||||| || || ||||| || || || |||||||| || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| || || ||||| || ||||| || ||||| || || || ||||||||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC--GCTGTCATG-TATC 50139 || ||||| || ||||| || | | | ||||||| | |||| || | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 || | |||||||||||||| || || ||||||||||| |||||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 || || | | | |||| ||| ||||| ||||| | | ||| ||||| ||| Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || | |||||| ||||| || || || || || ||||| | |||||| || | ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || || || || || ||| | | ||| || || || ||||| || || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || |||| || || || || || ||| | | | || | |||||| | Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTA 121568 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 | ||| || || | || || || || |||||||| || || || || |||||| ||| Sbjct 121567 AGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAAATAA 121508 Query 50500 ATATT 50504 | ||| Sbjct 121507 AAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718219419020000