Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq5403 118 1e-21 >seq5403 Length=2915140 Score = 118 bits (130), Expect = 1e-21 Identities = 357/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Minus Query 13642 AGATGTTTAAAAATTAAACAC-GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAG 13700 ||||| | || |||| ||| ||||| || || |||||||| || || || || || Sbjct 122068 AGATGCTGGAACATTAG-CACAGCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAG 122010 Query 13701 TTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC 13760 ||||| || || || | || ||||||| ||||| || || | ||| || || | || Sbjct 122009 CTCGTTGGAGAAGGTCAGACCAGGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGC 121950 Query 13761 GAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAA 13820 ||| ||| ||||| |||||||| || |||||||| || || | || |||||||| Sbjct 121949 GAAGCTACCGCTGAAGAAGATTCCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAA 121890 Query 13821 CGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATC 13880 || || || ||||| ||||| || | || || | Sbjct 121889 GTTGGCAGACTTTGAGGAGATCCAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGG 121830 Query 13881 CATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATC 13940 ||| ||||| || |||||||| | | || || | | | | |||||| || || Sbjct 121829 CATCGTTTCAATGGCATTGAACAGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTC 121770 Query 13941 AATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAA 14000 || |||| || ||||| || ||||||| |||||| || || || || || |||||||| Sbjct 121769 GATGAGTACACTGTACATCTCCGAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAA 121710 Query 14001 ACATCTAGCTTC--TGACCATTGTACCTCC-GAGTAAAATCTTTCTGCCAAGTTTTCATT 14057 ||| | ||| || ||||| || |||||| || | || | || ||| || || || Sbjct 121709 ACAGCGAGCCTCCGTGACC--TGAACCTCCTGACT-GAAGCGCTCAACCAGATTCTCGTT 121653 Query 14058 AACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC 14117 ||||| ||||| ||| ||||| || |||| | || || |||| | || || Sbjct 121652 TACAATTCCATCGGAAGCAGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATC 121593 Query 14118 ATTGTTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCA 14177 | || || | |||||||| | |||||| ||||| || || || || |||||||| Sbjct 121592 GTCCTTAAGGCGGTGCCAATCGGTAAGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCA 121533 Query 14178 AAAA 14181 ||| Sbjct 121532 GAAA 121529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555897020000