Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5218 439 3e-118 seq5403 143 4e-29 >seq5218 Length=3038582 Score = 439 bits (486), Expect = 3e-118 Identities = 1243/1890 (66%), Gaps = 34/1890 (2%) Strand=Plus/Minus Query 70787 TTTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGC-GGCTTTCGTACGTAGATAGTAC 70845 ||| |||||| | ||||||||||||| || || |||||| || || | |||||| Sbjct 2802898 TTTTCTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTT-GTGCGCAAGTAGTAC 2802840 Query 70846 ATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAG 70905 || || ||||| ||||| |||| ||| ||||| || || || || |||| Sbjct 2802839 ATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAG 2802780 Query 70906 CTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCT 70965 | || || || | || ||||| | ||||| || ||||| || || || || | ||| Sbjct 2802779 TTTGGCTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCT 2802720 Query 70966 GCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGC 71022 || |||||||| || | | || || |||||||||| ||||| |||| |||| Sbjct 2802719 GCGGCCATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG 2802660 Query 71023 TTAATATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCA-ATAATCCT 71078 | | || ||||| | || |||| ||||||||||| || ||| | || ||| Sbjct 2802659 ---ACCTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTG 2802604 Query 71079 ATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 ||| || || || || | ||| || | ||| || ||| | || || | |||| | || Sbjct 2802603 ATTCTTCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTT 2802544 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 || ||||| || || ||||| | ||| | | || |||||||| | ||||| || || Sbjct 2802543 GACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTC 2802484 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | || || ||||| |||| |||||||||||| ||||| || ||||| || |||||||| Sbjct 2802483 GAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAA 2802424 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 || ||||||| |||||| | ||| || || ||| || ||| | |||||| Sbjct 2802423 AAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAG 2802364 Query 71319 ATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT-AGCGTATGATC 71377 ||| | || || || ||||| | || | || Sbjct 2802363 ATCTGTCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT-TC 2802305 Query 71378 CTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTC 71437 || |||| || || || | || || ||| ||| ||||| ||||| || || | |||| Sbjct 2802304 CTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTC 2802245 Query 71438 CATAATAAATGGTTTCGAAAATCTTCTTATTGA-GATCTTGTGCTTCCGGGCTATCAAAT 71496 || | ||||||||||| || |||| | || | || || || ||| ||| || | Sbjct 2802244 CAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAG 2802186 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 |||||| | ||||| | |||||| || | || |||||||| || || ||||| | Sbjct 2802185 GGATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGA 2802126 Query 71557 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 71616 || || ||| || | | || || || | || ||| | || |||||||| || ||| Sbjct 2802125 TGCCTTAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTA 2802066 Query 71617 TTGAGATTTCTGACTATTA-CTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 ||||| |||||| | | ||||| || ||||| || || || ||| || | Sbjct 2802065 TTGAGGTTTCTGGCCACCGTCTTTGTG-ACCTCCTTAAGCTTTTTGAAGTCATATGTTTT 2802007 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATT 71732 ||| | ||||||| ||| | || | ||||||| ||| ||||| || | ||| | Sbjct 2802006 CTCTGGCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTC 2801947 Query 71733 AGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 71792 | | || | | |||||| ||||| |||||||| || || ||||| || | || Sbjct 2801946 GGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTT 2801887 Query 71793 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTC 71852 ||||| || |||||| ||| ||||| ||||| | || || | ||| | ||||| || Sbjct 2801886 CTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTC 2801827 Query 71853 AATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATATTCTTGTATC 71911 | || || || || || || ||| | | ||| | || |||| | || | | Sbjct 2801826 CACTTGCGACTCAATGATGGCGAACCACAAGGACT-GTGCTTTTACAGT--TCGGTTTGC 2801770 Query 71912 TCTTTTCTCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 | | ||| | ||||||| ||||| ||| ||||| || ||||| ||| | Sbjct 2801769 GCGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATG 2801710 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 | |||||| |||| | ||||| | | ||||| || ||| | | |||||||| Sbjct 2801709 AAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTT 2801650 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||| |||||||| || ||||| || || ||| || | ||| | || || |||||| || | Sbjct 2801649 CATGAAGAGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCT 2801591 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || |||||||| ||||| || || ||| | | || ||| |||||||| || || | | Sbjct 2801590 TGCCAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGAT 2801531 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | |||||||||| ||| || |||||||| | |||| || ||| | Sbjct 2801530 AAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGT 2801471 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 || | ||||||| ||| |||| | ||||||||| | || ||||| ||| | || | Sbjct 2801470 TAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAG 2801411 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || | |||||||| | || ||| ||||| || || ||||| || ||||| Sbjct 2801410 TACCCTTTGCACGAATACAATGGACATT--AAGACCAATACCACCTGCAGACTTGGAGAT 2801353 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | |||||| | | | | | |||| ||||| || || ||||| | || Sbjct 2801352 CATGGCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAG 2801293 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 |||||||| || | ||| ||||| | || | || ||||| || || ||||| Sbjct 2801292 GAGAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGC 2801233 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 |||||| || | || || || | ||||||||||| | || | || || || Sbjct 2801232 GTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTC 2801173 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 | ||| ||||| | || || ||||| | ||| ||||| |||| || |||| || Sbjct 2801172 TCCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACC 2801113 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 ||| ||||| | | ||| || |||| ||| || || ||||| |||||||| ||| Sbjct 2801112 ATTGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAA 2801053 Query 72627 GTCTCGTTCGTAAATAATAACCGAATTGAG 72656 ||| || || ||||| ||| ||| || || Sbjct 2801052 GTCACGATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 143 bits (158), Expect = 4e-29 Identities = 364/549 (66%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 42068 GCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 42127 || || |||||||| || || || || || || | |||||||| || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 42128 GGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATT 42187 ||||| || || ||||| || ||||| || || || || || || ||||||||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 42188 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATC 42244 || ||||| || ||||| || || | | ||||||| | ||| ||| | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 42245 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 42304 || | |||||||||||||| || || ||||||||||| |||||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 42305 AGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCT 42364 || || | | | |||| ||| || || ||||| | | ||| ||||| || Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 42365 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGT 42424 || || | |||||| ||||| || || || || || ||||| | ||||| || ||||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 42425 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAA 42484 || || || || || ||| | | ||| ||||| || ||||| || || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 42485 AACGCCAATACATGTTTTATAAAAT---ATTTTTCGTCCGGTGTTAA-TTTATTCCAATC 42540 || |||| || || || || | || |||||| |||| | |||||| Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCC----TTAAGGCGGTGCCAATC 121572 Query 42541 ATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTT 42600 | | ||| || || | || || || || || ||||| || || ||||| |||||| Sbjct 121571 GGTAAGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAA 121512 Query 42601 ATACATATT 42609 ||| | ||| Sbjct 121511 ATAAAAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671093059180000