Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5403 239 7e-58 seq5200 188 1e-42 seq4543 172 8e-38 seq5218 168 1e-36 >seq5403 Length=2915140 Score = 239 bits (264), Expect = 7e-58 Identities = 568/847 (67%), Gaps = 36/847 (4%) Strand=Plus/Plus Query 125036 AAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGA 125095 ||||||| | ||||| || ||||| ||||| ||||| || || |||||||| || ||| Sbjct 121514 AAAGGCTGAAGCCTCTTTCTGGACAGTCGAGGAGGTGGACCTTTCCAAGGATCTTACCGA 121573 Query 125096 TTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTT 125155 |||| | || | | || ||| || | || || || ||| | |||||||||| Sbjct 121574 TTGGCAC---CGCCTTAAGGACGATGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTT 121630 Query 125156 TGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGA 125214 ||| | ||||||||||| || ||||| ||||| ||||| || ||| ||| ||| | Sbjct 121631 TGCTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGA-GCGCTTCAGTCAGGAGGTTC 121689 Query 125215 CCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | |||| ||| || ||||| || ||||||||| || || ||||| |||||| Sbjct 121690 AGGTCACGGAGG-CTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAACGTACACTCG 121748 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC---GCAACGTAAACACATG 125330 || |||||| | ||| || |||| |||||| | ||||| || || | || Sbjct 121749 GAGATGTACAGTGTACTCATCGACACTTACATTAGAGATCCCCACCAGCGCGAGTAC--- 121805 Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGAT 125386 || || || || || || ||| ||||| | || || ||||| | |||| | | Sbjct 121806 CTGTTCAATGCCATTGAAACGATGCCGGC----GGTGAAGCGCAAGGCCGATTGGGCGCT 121861 Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTAC---GCCGACAGACTGGTGGCATTCGCCGC 125443 |||||| | |||||| | || | || | | | || || || || Sbjct 121862 GGCCTGGATC---TCCTCAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTTTTGCTGC 121918 Query 125444 CGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGG 125503 ||||||||| |||||||| ||||| || || ||||||| ||||| |||||||| || Sbjct 121919 CGTAGAGGGAATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCGAGG 121978 Query 125504 ACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTG 125563 || ||||| || ||||| | |||||| | || || | ||||| ||||| ||||| Sbjct 121979 TCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTCACTG 122038 Query 125564 TGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGA 125623 |||||||| | ||| |||| | | |||| ||||| || || || | | | Sbjct 122039 CGACTTTGCTGTGCTAATGTT---CCAGCATCT-CGTCCAGAAGCCACGTCGGGAGCGCA 122094 Query 125624 AAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATC 125683 ||||| | || | ||| || ||| || ||||| ||||| || || || | Sbjct 122095 -----TCATCGAGATCATCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACAGACGC 122149 Query 125684 CCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGT 125743 | | || || | |||| |||||||||||| | | |||| | ||||| || || || Sbjct 122150 CTTGCCCGTGAATTTGATCGGCATGAACTGCGACTTGATGTCACAATACATCGAATTCGT 122209 Query 125744 GGCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTT 125803 || || || |||||| ||| || | | | || || |||||| |||||||||| || Sbjct 122210 TGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAATCCTTT 122269 Query 125804 TGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAG 125863 |||||||| | || || || || || ||||||||||| || || |||||||| | Sbjct 122270 CAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGTGGG 122329 Query 125864 CGAGTAC 125870 |||||| Sbjct 122330 AGAGTAC 122336 >seq5200 Length=2197361 Score = 188 bits (208), Expect = 1e-42 Identities = 317/455 (70%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||| || || ||||| ||||| ||| |||||| || | | ||| ||| || Sbjct 1469020 TGGGCCCGGTATACGGTTTCCAATGGCGGCACTTTGGTGCTGAATATACTACCTGTGACG 1469079 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCA 70193 ||||| || |||| | |||||| || || | |||||||| |||||| || Sbjct 1469080 ATGACTACCGCGGCAAGGGCATCGATCAACTGAAGCAGGTTATTGACACGATCAAGAACA 1469139 Query 70194 ATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCC--TGCAGATTTGCACCAAA- 70250 |||| | ||| | | ||| | |||| | |||||||| || | ||| ||||| Sbjct 1469140 ATCCTTCGGATCGACGTATCATCATGTCGGCGTGGAATCCGCTGGACATT----CCAAAG 1469195 Query 70251 -TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTACGA---TGGCAAA 70303 ||||| | || ||||| ||||| |||||||||||||| ||| | || |||| || Sbjct 1469196 ATGGCATTGCCCCCGTGCCACTGCTTGGCTCAGTTTTATGTCTCTCAGGAGCGTGGCGAA 1469255 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 | || ||| ||||||| | ||||||||||||||| | || || ||||| |||||| Sbjct 1469256 CTCTCCTGCCAGCTGTATCAACGAAGTGCCGACATGGGCTTGGGAGTGCCCTTCAACATT 1469315 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||| | ||||||| | ||||||||||| | || || ||||| | || Sbjct 1469316 GCCTCCTACGCCCTGTTGACCTATATGATTGCTCATGTCACTGGTCTGAAGCCTGGTGAC 1469375 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTG 70483 || || |||||||| || ||| | || || || |||||||| | |||||| | ||| | Sbjct 1469376 TTTGTTCACACCATGGGAGACACGCATGTTTACCTAAATCACGTGGAGCCACTTCAGGAG 1469435 Query 70484 CAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCT 70518 ||||||||||| |||||| | || || |||||||| Sbjct 1469436 CAACTCGAACGCGAGCCGCGTCCCTTCCCCAAGCT 1469470 >seq4543 Length=83453 Score = 172 bits (190), Expect = 8e-38 Identities = 384/573 (67%), Gaps = 20/573 (3%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | |||||||||||||| || ||||| | || |||||||| || || || ||| Sbjct 10797 TTGCGGAAGAAGATGACTCCGGCCCGGGGACCGCGCAGCGTCTTGTGGGTCGTGGTCGTC 10738 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||||||| || || ||||| ||||| | | | | || | | ||||| | Sbjct 10737 ACAATGTCGGCGTATTCGAAGGGCGATGGAATCAGTCCGGCGGCCACTATTCCCGCCACA 10678 Query 127222 TGTGCAATATCGGCCATCA-GCAAGGAGCCGGCTGCATCG--GCA-ATCTCTCGGAATCG 127277 || || || |||||||||| | ||| | || ||||| ||| |||| ||||| || Sbjct 10677 TGGGCCATGTCGGCCATCAGGTAAGCACCC----ACATCGTCGCAGATCTGCCGGAAACG 10622 Query 127278 TCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAA 127337 |||||||| |||| | ||||| | |||| || ||||||| | || ||| Sbjct 10621 GGCATAGTCCAGCAGCCGGGAGTAGCACGAGATGCCAGCAATGATTATCTGCGGCCGGAA 10562 Query 127338 TAGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTT 127397 ||||| ||| || || ||| ||||||||| || || |||| |||| ||| || Sbjct 10561 GGTCTTGGCTGCCTCCGCCAGCTTGTCATAGTCGATGATACCCGTCTCCGGATTCACTTT 10502 Query 127398 GTACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAA 127445 ||| |||||||| ||||| |||| || || ||||| | || ||| ||| Sbjct 10501 GTAGGGCATGCTCTCGAAGAAGATCGACGTGGCGGAGATCTTCTTGGTGGGCGTGAAGAA 10442 Query 127446 TCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTT 127505 || || |||| ||| || || ||||||||||| | |||||||| | | || || Sbjct 10441 GCCATGGGTCAAGTGACCACCATCGGGCAGATCCAAGCCCATGATGCGGTCATGGGGACG 10382 Query 127506 AACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 || || || || ||||| | || ||| || || || || || || ||| || Sbjct 10381 GCAGACACCGGTATAGACGGCCAGATTCGCCGGAGAACCGGAATAGGGCTGGACATTGAC 10322 Query 127566 TCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTC 127625 ||||| | | |||| || ||||| | ||| ||| | ||| || || ||||| Sbjct 10321 GCCCCACTTGTCCTCGGGCAGGTTGAAGAGTTCACGACCTCGTTTCTGGGCCAGAAGTTC 10262 Query 127626 GATGCGATCGATAAACTCGTTACCACCATAGTA 127658 |||| ||||| ||||| || || |||||||| Sbjct 10261 AATGCAGTCGATGAACTCATTGCCGCCATAGTA 10229 >seq5218 Length=3038582 Score = 168 bits (186), Expect = 1e-36 Identities = 393/582 (68%), Gaps = 18/582 (3%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CA 96863 ||| ||||||| ||| ||| || || || ||||| ||| | | || ||| || || Sbjct 2801424 AACCAACGGCACTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAA--CAACGTGGCA 2801481 Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||| || ||||| || || ||||| || || | ||| | || | || || Sbjct 2801482 CGATATGTGGATCAGGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCC 2801541 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||| |||| |||||||| ||| | || | || || ||||| |||||| Sbjct 2801542 TGGCATTCGGATGTTTTTGAGTTTCTGGACCTTAAGAAGAATACTGGCAAGGAAGAGCAT 2801601 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 |||||| | || ||||| ||||| || ||| | |||||| | |||||||| || || | Sbjct 2801602 CGAGCCCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAG 2801661 Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103 | | || ||||| || | || ||| || | || || || ||| ||| Sbjct 2801662 GCCAATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGG 2801721 Query 97104 GGCGAAGAGTTTGAG--GCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGAC 97161 ||||| |||||||| || | || | ||||| || ||||| || || | | Sbjct 2801722 GGCGATGAGTTTGAAAAGCTA--TATGTGAAATACGAACAGGAGGGACG---CGCAAACC 2801776 Query 97162 GA---GTCGATGCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGA 97217 || || | |||| || || |||| |||||| | | | || || |||||||| Sbjct 2801777 GAACTGTAAAAGCAC-AGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGC 2801835 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGG 97276 | ||| ||||| |||| |||||| | ||| || || || |||||||||| || |||| Sbjct 2801836 AATCCTTACATGCTCTTCAAGGACGC-GTGCAACCGAAAGAGCAACCAACAGAACGTGGG 2801894 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGAC 97336 |||||| || || |||||||||||||||||||| |||||| | || || ||||||| Sbjct 2801895 CACCATTAAATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCCGACGAGAT 2801954 Query 97337 GGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 ||||||||| | |||||||| || ||| || |||||| Sbjct 2801955 TGCAGTTTGCAATTTGGCATCGATCGCTCTCAACATGTTTGT 2801996 Score = 105 bits (116), Expect = 1e-17 Identities = 318/484 (66%), Gaps = 8/484 (2%) Strand=Plus/Plus Query 97782 AGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAAT 97841 |||||||| | ||||||| ||||||||||| || | ||| | ||| | | || ||| Sbjct 2802412 AGAAACTCCCTTTTGGTGGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAAT 2802471 Query 97842 GCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAG 97901 ||||| || || || | || |||| || || |||||| | ||||| ||| Sbjct 2802472 AACGAATCCTTCGAGCCCTATACAACAAATATTTATACAAGACGCGTACTCTCTGGCGAG 2802531 Query 97902 TTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG--GCTCAATCTGTGGAACG 97959 || ||| || |||| || ||| | | || ||| ||| ||| || ||||| ||| Sbjct 2802532 TTCCAAGTGGTCAACCATCATTTGCTGAGGGATTTG--ACGGAGCTGGATTTGTGGGACG 2802589 Query 97960 ATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCATC-ATC 98018 |||||||| | |||||| | || || || ||||||||||| ||| ||| || Sbjct 2802590 ATGACATGAAGAATCAGATCATATCCAGCAGGGGATCCATTCAAAATATT-GAATCAATT 2802648 Query 98019 CCGGAAGAGTTGCGCAGA-ATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGAT 98077 || || || | || ||| | ||||| || || ||||| || | || | || Sbjct 2802649 CCACAAAAGGTCCG-AGACCTTTACAAAACAGTTTGGGAAATCTCAGTTAAATCAACAAT 2802707 Query 98078 CGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGT 98137 | ||||| || || | |||| | || || ||||| || || |||||| | | || Sbjct 2802708 TAAAATGGCCGCAGATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTTCAATATCCATGT 2802767 Query 98138 TGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCT 98197 || ||||| | ||| | | || || ||||| || ||| | ||||| || || Sbjct 2802768 GGCAGAGCCAAACTATGGAAAGCTCACATCCATACATTTCTACTCCTGGAAAGCTGGTCT 2802827 Query 98198 CAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGT 98257 || || || |||||||| || | |||||| | || |||| ||||| | ||||| || Sbjct 2802828 TAAAACCGGAATGTACTACTTGCGCACAAAGCCAGCTGCCAACGCCATTCAGTTTACCGT 2802887 Query 98258 GGAC 98261 ||| Sbjct 2802888 CGAC 2802891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741008252180000