Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq1066 86.0 9e-12 seq1178 84.2 3e-11 seq1047 84.2 3e-11 >seq1066 Length=6976 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| | || ||||||| | ||||||| ||||||||||| |||||||||||| Sbjct 6827 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACCA 6886 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 6887 CTGAGCTATA 6896 >seq1178 Length=45355 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 43286 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 43227 Query 108370 GAACGG 108375 |||||| Sbjct 43226 GAACGG 43221 >seq1047 Length=4258 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 365 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 306 Query 108370 GAACGG 108375 |||||| Sbjct 305 GAACGG 300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746169497320000