Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5218 167 5e-36 seq5215 102 2e-16 seq5213 102 2e-16 seq5403 100 7e-16 >seq5218 Length=3038582 Score = 167 bits (184), Expect = 5e-36 Identities = 161/207 (78%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || ||||| || |||||||| ||||||||||| || || | || ||||| || || Sbjct 2718295 TGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGC 2718354 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 2718355 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 2718414 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | |||||| ||||| ||||| || || || ||||| || || Sbjct 2718415 GCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 2718474 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || |||||||| ||| Sbjct 2718475 AGGGTCTTAACGAAGATCTGCATCTTG 2718501 >seq5215 Length=2160492 Score = 102 bits (112), Expect = 2e-16 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || ||||| Sbjct 1797539 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 1797598 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || || || ||||| ||||| Sbjct 1797599 GCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTG 1797658 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| || || ||||| | || || || || ||||| | ||| Sbjct 1797659 ACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTTCCAGTCAAGGTT 1797718 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 1797719 TTCACAAAGATCTGCATTTTG 1797739 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | || || || || || ||||| Sbjct 1797311 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 1797370 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || ||||| ||||| || || Sbjct 1797371 GCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1797430 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| ||| || ||||| || || || ||||||||||| | || Sbjct 1797431 ACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTC 1797490 Query 104543 TTTACAAATATCTGCATT 104560 || || || ||||||||| Sbjct 1797491 TTCACGAAGATCTGCATT 1797508 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || || || || || || | || || || || || ||||| Sbjct 1797083 GTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 1797142 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || || || || || || || || ||||| ||||| || || Sbjct 1797143 GCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1797202 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| ||| || ||||| || || || ||||||||||| | || Sbjct 1797203 ACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTC 1797262 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1797263 TTCACGAAGATCTGCAT 1797279 >seq5213 Length=770604 Score = 102 bits (112), Expect = 2e-16 Identities = 187/269 (70%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 238589 CCTATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACG 238648 ||| |||||||| || || ||||| | ||| | ||||||||||| | ||| | || Sbjct 538369 CCTGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCG 538428 Query 238649 AATGTATTGGGCTAAAAAGATACTTGAATGGA-CTAGATCTCCAAAGGAAGCTCTTAGAT 238707 ||||| |||||||||||||| || || |||| | ||| |||| || | || || | Sbjct 538429 CATGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAGA-CTCCTGAGCAGGCCCTGGAGT 538487 Query 238708 ATAGTATTTATCTGAACGATAAATACGAACTCGACGGTACG-GATCCTAACGGATACGTA 238766 | ||| || || ||||| ||| || ||||| ||| || || || || || || Sbjct 538488 ACGCCATTCTACTTAATGATAAGTACAGTCTGGACGG-ACGAGACCCCAATGGTTATGTG 538546 Query 238767 GGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTT 238826 || || |||||||| || | ||| | || || | || |||| || || |||| ||| Sbjct 538547 GGGTGCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGATCTATCTTT 538606 Query 238827 GGAAAAGTTAGATACATGAATTATGAAGG 238855 ||||| | | |||||||| ||| |||| Sbjct 538607 GGAAAGATACGCTACATGAACTATCAAGG 538635 >seq5403 Length=2915140 Score = 100 bits (110), Expect = 7e-16 Identities = 283/430 (66%), Gaps = 5/430 (1%) Strand=Plus/Plus Query 268856 CTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGT 268915 || || || ||||| | | ||||| || || ||||| ||||| || ||| ||| || Sbjct 121620 CTGGCCTTCTTTGCTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCTTCAGT 121679 Query 268916 CAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAAT 268975 || ||||| ||| | | || || | |||||||| || ||||| || || || ||||| Sbjct 121680 CAGGAGGTTCAGGTCACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAAC 121739 Query 268976 ATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA-TAGATGATAACAACGAAAA 269034 | || || |||||||||||| || | || || ||||| | |||| ||| | || | Sbjct 121740 GTACACTCGGAGATGTACAGTGTACTCATCGACACTTACATTAGA-GATCCCCACCAGCG 121798 Query 269035 GAAAAGACTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | || || | | || ||| ||| |||| || | || ||||| Sbjct 121799 CGAGTACCTGTTCAATGCCATTGAAACGATGCCGGCGGTGAAGCGCAAGGCCGATTGGGC 121858 Query 269095 TCTGAAATGGATAAAC-GATAGCGCGCC--TTACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 ||| ||||| | | || ||| | ||||| | | | |||||||| || Sbjct 121859 GCTGGCCTGGATCTCCTCAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTTTTGCTGC 121918 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 ||||| || || ||||| || || ||| | ||||| ||| ||||||| |||| Sbjct 121919 CGTAGAGGGAATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCGAGG 121978 Query 269212 CCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTG 269271 || ||||| || | || ||||| ||||| |||| |||||||||||| | ||||| Sbjct 121979 TCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTCACTG 122038 Query 269272 CGACTTCGCT 269281 |||||| ||| Sbjct 122039 CGACTTTGCT 122048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151317262394000