Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5413 102 7e-17 >seq5413 Length=1192065 Score = 102 bits (112), Expect = 7e-17 Identities = 180/258 (70%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG- 5298 ||||||||||| |||||| || ||||| || || || |||| | ||| | || | Sbjct 485939 CCGGTAGAACCAAATCCACCCTCTCCGCGCTCTGTATCCTCCA---GCTTATCGACTAGC 485883 Query 5299 ---AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTT 5355 |||| |||| | | ||||||||||| || | |||||| || | ||| || || Sbjct 485882 TCTAACT-CTGGATAGAAGATGCGTTCGCAGATAAACTGAGCAATGCGGTCCCCACGTTT 485824 Query 5356 AACCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAG 5413 || || ||||| || | ||| ||||||||||| || || | || || |||||| Sbjct 485823 TACGTCGAAGTCCACGT--CGGAATGATTAAACAGCACAACACCCAGGTTTCCACGGTAG 485766 Query 5414 TCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGT 5473 |||||||| | || || || |||||||| || |||| |||||||| | || || || Sbjct 485765 TCTTCGTCTACCACTCCGGCACCCACGTCAATGAAGTTCTTGACCGCCAAACCAGACCGC 485706 Query 5474 GGTGCTATGCGTCCGTAG 5491 || || | ||||| ||| Sbjct 485705 GGAGCCACTCGTCCATAG 485688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447719617160000