Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5413 127 2e-24 >seq5413 Length=1192065 Score = 127 bits (140), Expect = 2e-24 Identities = 157/210 (75%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 5581 GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCTTTACCTCGAAATCGTTGTGGC 5639 ||| |||||||| | ||| || || ||||| || ||| ||||| ||||| || || | Sbjct 485862 GCGTTCGCAGATAAACTGAGCAATGCGGTCCCCACGT-TTTACGTCGAAGTCCACGTCG- 485805 Query 5640 CGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGC 5697 ||| || |||||||| || |||| ||| || |||||||| |||||| ||| || || Sbjct 485804 -GAATGATTAAACAGCACAACACCCAGGTTTCCACGGTAGTCTTCGTCTACCACTCCGGC 485746 Query 5698 GCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCA 5757 |||||||| ||||||| ||||||||||| || || || |||||||| || || ||| | Sbjct 485745 ACCCACGTCAATGAAGTTCTTGACCGCCAAACCAGACCGCGGAGCCACTCGTCCATAGGA 485686 Query 5758 CCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || || || | ||| | || ||||| || Sbjct 485685 GCCCTCCGGGACCTGGACTTGTAGGTCAGT 485656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430025572916000