Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5073 123 1e-23 seq5063 122 5e-23 seq5030 122 5e-23 seq5358 116 2e-21 seq5379 109 3e-19 >seq5073 Length=2625208 Score = 123 bits (136), Expect = 1e-23 Identities = 91/105 (87%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 11444 AAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| |||| |||||||||| |||||||||| |||||||||||||||||||||| Sbjct 822792 AAAAAATTAAATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACG 822851 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGAT 11544 ||||||| |||||||||||||||||||| | ||||| ||||| Sbjct 822852 ACGCTCTAACCAACTGAGCTAATGGGCCTTGCTGACGACAGTGAT 822896 Score = 120 bits (132), Expect = 2e-22 Identities = 88/101 (87%), Gaps = 4/101 (4%) Strand=Plus/Plus Query 11433 ATAGAATTAAT--AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| ||||||| |||| ||||||||| |||||||||| ||||||||| Sbjct 822398 ATAAAATAAATGGAAAAAATATAATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 822457 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 822458 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 822498 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 822641 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 822700 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 822701 TGAGCTAATGGGCC 822714 >seq5063 Length=337993 Score = 122 bits (134), Expect = 5e-23 Identities = 86/97 (89%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||| | | |||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 111313 TAAAAAAACTAGTATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 111372 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||| |||||||||||||||||||| |||| || Sbjct 111373 GACGCTCTAACCAACTGAGCTAATGGGCC-TCGATGA 111408 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 111161 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 111220 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 111221 TGAGCTAATGGGCC 111234 >seq5030 Length=855886 Score = 122 bits (134), Expect = 5e-23 Identities = 78/86 (91%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 730610 AAAAATTTAAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 730669 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 730670 GCTCTAACCAACTGAGCTAATGGGCC 730695 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 731254 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 731195 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 731194 TGAGCTAATGGGCC 731181 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 737117 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 737058 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 737057 TGAGCTAATGGGCC 737044 >seq5358 Length=3330258 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 11437 AATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||| || |||| |||||| |||||||||| |||||||||| ||||||||||||||| Sbjct 2583915 AATAAAAAAAAGTAATCAA--TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 2583858 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||| |||| |||||||||||||||| Sbjct 2583857 TAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 2583822 >seq5379 Length=846508 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 817009 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 816950 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 816949 TGAGCTAATGGGCC 816936 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473671918000