Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5381 167 4e-37 seq5041 80.6 4e-11 >seq5381 Length=1726526 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGA-TCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||||||||||| | ||| | || ||||||||||| || || || |||||||||| Sbjct 1724869 CGCTAAGCGTCATCGCAAAGTCT-TGCGTGATAACATCCAGGGTATTACGAAGCCAGCTA 1724927 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||| ||||||||||||| || || ||||| ||||||| | |||| || || | Sbjct 1724928 TCCGTCGTTTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGTCTTATCTACGAGGAAA 1724987 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| ||| | || | || | ||| ||| || | |||||| || ||| |||| Sbjct 1724988 CTCGTGGAGTTCTAAAAGTGTTTTTGGAGAACGTAATTCGCGATGCTGTCACCTACACCG 1725047 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||| | ||||| || || |||||||| | || ||||| |||| | |||| Sbjct 1725048 AACACGCCAAAAGGAAGACCGTGACGGCCATGGATGTTGTTTATGCCCTGAAGAGACAAG 1725107 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | || | | || || ||||| ||||| Sbjct 1725108 GACGCACTCTATACGGCTTTGGCGGTTAA 1725136 >seq5041 Length=823202 Score = 80.6 bits (88), Expect = 4e-11 Identities = 89/119 (75%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | | || ||||||||||| || ||||||||||| || || Sbjct 662974 CGCCAAGCGCCATCGCAAGGTTTTGCGTGATAACATCCAGGGCATCACCAAGCCGGCCAT 663033 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || || |||| || || || || || |||||| | || |||||| | || || |||| Sbjct 663034 TCGCCGCTTGGCCCGCCGCGGGGGCGTGAAGCGTATTTCGGGATTGATTTACGAGGAGA 663092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070171311500