Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5218 459 3e-124 seq5403 165 1e-35 >seq5218 Length=3038582 Score = 459 bits (508), Expect = 3e-124 Identities = 1248/1888 (66%), Gaps = 38/1888 (2%) Strand=Plus/Minus Query 61985 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62044 |||||| | || || ||||||| || || || || || || | ||||||||||| Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 62045 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62104 ||||| ||||| |||| ||| ||||| || || || || ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 62105 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62164 ||||| | ||||||||| | || || || ||||| || || || || | ||||| || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 62165 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 62221 |||||| || | | || || |||||||||| ||||| |||| |||| | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG---AC 2802658 Query 62222 ATCTTCTGGAAG-GTTTG--TATTCTGAATGGATCCACCATCTGCC-ATAATCCTATTCT 62277 | || ||||| | || |||| ||||||||||| || ||| || ||| ||||| Sbjct 2802657 CTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTCT 2802599 Query 62278 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 62337 | || ||||| | ||| || | ||| || ||| | || || | ||| | || || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 62338 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCG 62397 |||| || || ||||| | ||| | | || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 62398 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 62457 | || ||||| |||| |||||||||||| ||||| || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 62458 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 62517 ||||||| || | | || |||| || || ||| || ||| | ||||||||| | Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACA 62576 ||| || ||||| || |||||| | | || |||| || Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT-TCCTTCA 2802300 Query 62577 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 62636 || || || || | || ||| | | || ||||| ||||| || || | || || | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 62637 TAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATA 62695 ||||||||||| ||||||| | |||| || || || ||| ||| || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATA 2802181 Query 62696 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62755 | | ||||| | |||||| || | || ||||| || || || ||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 62756 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 62815 ||| || | | || || || | || ||| | || |||||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 62816 ATTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA 62874 |||||| | | ||||| || ||||| || || || ||| || ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTGTG-ACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTG 2802002 Query 62875 ---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 62931 | ||||||||||| | || | ||||||| ||| ||||| || | ||| | | Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 62932 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTT 62991 | || | | || || ||||| |||||||| || || || || || | || |||| Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 62992 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCT 63051 | || |||||| ||| ||||| ||||| | || ||| | ||| | ||||| || | | Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 63052 GAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCTCCT 63109 | || || || || || ||| | | ||| | || |||| | | |||| ||| Sbjct 2801821 GCGACTCAATGATGGCGAACCACAAGGACT-GTGCTTTTACAGTTCGGTTTGCGCGTCCC 2801763 Query 63110 TTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCC 63169 | || || ||||| ||| | ||| ||||| || ||||| |||| | | ||| Sbjct 2801762 TCCTGTT-CGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 63170 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63229 ||| |||| | ||||| | | |||||| || | | ||| |||||||||||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 63230 GAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 63288 |||||| || ||||| || || ||| || | ||| | || || ||| || || || || | Sbjct 2801643 GAGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAG 2801585 Query 63289 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 63348 ||||||| ||||| || || ||| | | || ||| |||||||| || || | || |||| Sbjct 2801584 TATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGG 2801525 Query 63349 CCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 63408 | | |||| ||||| ||| || |||||||| | |||| || ||| ||| | | Sbjct 2801524 CAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGA 2801465 Query 63409 CTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCAC 63468 |||||| ||| |||| | ||| || || | || ||||| ||| | || | | || Sbjct 2801464 CTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCT 2801405 Query 63469 TGGCACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63524 | ||||||||| ||| || ||||| || || ||||| || ||||| | Sbjct 2801404 TTGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATG 2801349 Query 63525 GCGCATCGTTTTAACGTGTCAT--AGATACCCTCTATGCTATCATCGATCATGTTAAGTA 63582 |||||| | | ||| || | | |||||||||| || || ||||| | || | Sbjct 2801348 GCGCATTG-CTCAAC-TGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGA 2801291 Query 63583 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 63642 ||||||| || | ||| ||||| | || | || ||||| || || ||||||| Sbjct 2801290 GAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGT 2801231 Query 63643 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATT 63702 |||| || | || ||||| | ||||||||||| | || | || || || | Sbjct 2801230 GCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTC 2801171 Query 63703 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 63762 ||| ||||| | ||| || ||||| | ||||||||| |||| || |||| || | Sbjct 2801170 CATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCAT 2801111 Query 63763 TTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 63822 | ||||| | | ||| || |||| ||| || || ||||| |||||||| ||||| Sbjct 2801110 TGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGT 2801051 Query 63823 CTCGTTCGTAAATAATAACCGAGTTGAG 63850 | || || ||||| ||| |||||| || Sbjct 2801050 CACGATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 165 bits (182), Expect = 1e-35 Identities = 294/427 (69%), Gaps = 3/427 (1%) Strand=Plus/Minus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || |||||||| || || ||||| || || || |||||||| || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| || || ||||| || ||||| || ||||| ||||| || ||||||||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATC 33483 || ||||| |||||||| || || | | ||||||| | ||| || | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 33484 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 33543 || | |||||||||||||| || || ||||||||||| |||||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 33544 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 33603 || || | | | |||| ||| ||||| ||||| | | ||| ||||| ||| Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 33604 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 33663 || || | |||||| ||||| || || || || || ||||| | |||||| || | ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 33664 ACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 33723 || || || || || || ||| ||| || || || ||||| || || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 33724 AACGCCA 33730 || |||| Sbjct 121627 AAGGCCA 121621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622904372380000