Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5218 150 2e-31 seq5213 149 6e-31 >seq5218 Length=3038582 Score = 150 bits (166), Expect = 2e-31 Identities = 554/850 (65%), Gaps = 37/850 (4%) Strand=Plus/Minus Query 147114 ACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTTT 147173 ||||| || ||||| | ||| || || || || || | ||| |||||||| || ||||| Sbjct 2802887 ACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCGGTTTTA 2802828 Query 147174 AAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT--ATAGGTTGGATTGG 147231 | ||| || ||| || ||| || ||||||| | |||| |||| |||| | | Sbjct 2802827 AGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAG--CTTTCCATAGTTTGGCTCTG 2802770 Query 147232 CCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCATGT 147291 ||||| | ||||| || ||||||||||| || | | || || ||||||||||| | Sbjct 2802769 CCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGCCATTT 2802710 Query 147292 CCAACACTACTTTTTG-TTTA------ATTTCCCAAGCGGTCTTGAAGAGCGCCTTGATA 147344 || || ||| |||| ||||||||| | || ||| | || | || Sbjct 2802709 -------TAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACC 2802657 Query 147345 TTGTGTGGAATTTCATCAATATTTTGTACAGATCC---GTTGTTTTTAATAATTTTTATC 147401 || ||||||||| ||||||||||| | ||||| | || | | || || || Sbjct 2802656 TTTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTC 2802597 Query 147402 ATGATATCTGTCGAATATACGTTGGTGTCTACGAGTTTATCGACGAGATGCTGATTGACC 147461 ||| ||| ||| | | | | | | | | | || | | ||| || |||||| Sbjct 2802596 ATGTCATC-GTCCCACAAATCCAGCT-CCGTCAAATCCCTC-AGCAAATGATGGTTGACC 2802540 Query 147462 ACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAAC 147521 ||||| ||||||| || || || | || | || | ||| | ||| | |||||||| Sbjct 2802539 ACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAG 2802480 Query 147522 GACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTAAGCAATCAATAAT 147581 || ||||| ||||| | ||| || ||||||| ||| || ||||| ||| | ||| | Sbjct 2802479 GATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGG 2802420 Query 147582 GAATTGCGTAAGCCGTGCATAGCCAT-TTCTCGCTTAAGCTCGTCCCAGTTCCAAAGATC 147640 || || | | || || | || ||| ||| || | | ||||| ||||||||| Sbjct 2802419 GAGTTTCTAACTCCATGTTTTTTGATGGACTC-CTTCAGACCTTTCCAGTCCCAAAGATC 2802361 Query 147641 ATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACAACTTGCAGGGCTTCC 147700 ||| | | ||| ||||| || |||| | || ||| ||| | || ||||| Sbjct 2802360 TGTCG---GCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCC 2802304 Query 147701 ATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACTTTGACTT--AGTGCA 147758 || |||| || || || |||| | || || |||||| || || ||| || || Sbjct 2802303 TTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAAC--TGGCTTCCAGGGCT 2802246 Query 147759 CCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCCTCTTGGCTGTCGTAG 147818 ||| | ||||| ||||| | |||| || ||||| || ||||| | ||| |||||| Sbjct 2802245 CCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAG 2802186 Query 147819 GGCATATC-CAAAATGGCGAACGTATCCGCAAGTCCTTGAATACCGATACCGATGGGTCG 147877 || ||| | || || | || || || || || |||| ||||| || || || || Sbjct 2802185 GG-ATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACG 2802127 Query 147878 GTGTCTGAAATTCGA-TGCTTGAGCGCTAGCCAACGGATAAAAATTCAAGTCGATAATTT 147936 || || ||||| || | |||| || | || || ||||| || | || || || | Sbjct 2802126 ATGCCTTAAATTGGACTTCTTG-GCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCT 2802068 Query 147937 TATTGAGATT 147946 ||||||| || Sbjct 2802067 TATTGAGGTT 2802058 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 2718437 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2718378 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | || || | || ||||| || || ||||||| | | | || ||||||||| Sbjct 2718377 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 2718318 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || ||||| | || |||| ||| | ||| | || || Sbjct 2718317 ATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCGCCTTCGTGGTGG 2718271 >seq5213 Length=770604 Score = 149 bits (164), Expect = 6e-31 Identities = 150/195 (77%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 71678 GATGAACTATGGAATGCTGCTCAGCGACAGCTACGCAATGAGGGTAAAATTCACGGATAC 71737 || || || |||||| | ||||| | ||| ||| |||||| ||||| ||||| | | Sbjct 538364 GACGACCTGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTC 538423 Query 71738 CTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTC 71797 || |||||||||||||| |||||||| |||||||||| | ||||| |||||||| || Sbjct 538424 CTGCGCATGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAGACTCCTGAGCAGGCCCTG 538483 Query 71798 GAGTATTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTAT 71857 ||||| | ||| || || |||| |||||||| ||||| || || || || |||||| Sbjct 538484 GAGTACGCCATTCTACTTAATGATAAGTACAGTCTGGACGGACGAGACCCCAATGGTTAT 538543 Query 71858 GTCGGTTGCATGTGG 71872 || || ||||||||| Sbjct 538544 GTGGGGTGCATGTGG 538558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629491960000