Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5218 297 5e-75 seq1218 118 3e-21 >seq5218 Length=3038582 Score = 297 bits (328), Expect = 5e-75 Identities = 1147/1792 (64%), Gaps = 49/1792 (3%) Strand=Plus/Plus Query 363391 TTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAA 363450 || |||| ||||| ||||| || ||||| | ||||||||| | || | || Sbjct 2801068 TTTGGATTCAAGACTCTGGAGCGTTCGTACCTCCTTAAAATCAATGGTAAAATCGCCGAG 2801127 Query 363451 CGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCC 363510 || || ||||| ||| | ||||| || || || || |||||| | || | ||||| Sbjct 2801128 CGACCCCAGCACATGCTTATGCGCGTGGCAATCGGAATCCATGGAGAAGACATCGATGCT 2801187 Query 363511 GCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATG 363570 || | || || || || | || | ||| ||||||||||| ||||||| | Sbjct 2801188 GCCGTGGAGACGTACAACTTGCTTTCGGAGCGTTATTTCACGCACGCTTCGCCAACGCTA 2801247 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | |||| || | ||| ||| | || ||||| ||||| || | |||| | Sbjct 2801248 TTTGCCGCTGCCACAAATCGTCCCCAGCTATCGTCTTGTTTTCTCCTGACCATGACTTCC 2801307 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 || || || ||||||||||| | || || || | || || | || |||||| |||| Sbjct 2801308 GACTCGATTGAGGGTATCTTCAAGTCAGTTGAGCAATGCGCCATGATCTCCAAGTCTGCA 2801367 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACA 363750 || || |||||| | |||| | |||||||| || | || |||| |||| || Sbjct 2801368 GGTGGTATTGGTCTTAATGTCCATTGTATTCGTGCAAAGGGTACTTCCATTTGCGGAACC 2801427 Query 363751 GGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTAC 363810 || || ||||| |||||||| ||||| | || ||| |||| || | || Sbjct 2801428 AACGGCACTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTAACAACGTGGCACGATAT 2801487 Query 363811 GTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCAT 363870 || || |||||||| || ||||| || || ||||| || ||||| ||||| ||| Sbjct 2801488 GTGGATCAGGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTTATCTAGAGCCCTGGCAT 2801547 Query 363871 GCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCA 363930 | ||| ||||||||||||| || || ||| || || || || || || || || Sbjct 2801548 TCGGATGTTTTTGAGTTTCTGGACCTTAAGAAGAATACTGGCAAGGAAGAGCATCGAGCC 2801607 Query 363931 CGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGT 363990 |||||| |||||||||| || ||| | | || | || ||||| || |||||||| | Sbjct 2801608 CGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCAAT 2801667 Query 363991 AAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGAC 364050 || | ||||| || || || || ||| |||| || || ||| ||||| ||||| || Sbjct 2801668 GAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGCGAT 2801727 Query 364051 GACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA----GACAAT 364106 || | || ||||| | || || ||| ||||||| | || || || | Sbjct 2801728 GAGTTTGAAAAGCTATATGTGAAATACGAACAGGAGGGA----CGCGCAAACCGAACTGT 2801783 Query 364107 TCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTA 364166 |||||| | ||||| |||||||| || ||||| | ||||| || | || || Sbjct 2801784 AAAAGCACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTA 2801843 Query 364167 TATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCA 364226 ||| | | ||| || |||||||||| ||| |||||| ||| || | || || ||| | Sbjct 2801844 CATGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAACCAACAGAACGTGGGCACCATTAA 2801903 Query 364227 GCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286 || || || || || || ||| | || ||| | | |||||||||| ||| || || Sbjct 2801904 ATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCCGACGAGATTGCAGTTTG 2801963 Query 364287 TAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---AAGATGGTACTTTTGACCACCA 364343 || | || |||||||| || |||||| | ||| || | |||| | | Sbjct 2801964 CAATTTGGCATCGATCGCTCTCAACATGTTTGTGACGCCAGAGAAAACATATGACTTCAA 2802023 Query 364344 GCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAA 364403 | ||| | || || || | | | | || ||| | ||| | || || | || Sbjct 2802024 AAAGCTTAAGGAGGTCACAAAGACGGTGGCCAGAAACCTCAATAAGATAATAGATATAAA 2802083 Query 364404 TTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGG 364463 | ||| ||| | || || ||| || || ||| | | ||||| || ||||| | || Sbjct 2802084 CTTTTACCCACTGCCGGAGGCCAAGAAGTCCAATTTAAGGCATCGTCCTATTGGCATCGG 2802143 Query 364464 TGTACAGGGCCTCGCTGACG------TTTTTATG----ATGCTCAAGATGGCATTTGATT 364513 || ||||| || ||||||| || ||||| || | | || || || Sbjct 2802144 CGTTCAGGGTCTGGCTGACGCGCTGATTCTTATGCGTTATCCCTACGAAAGC----GA-- 2802197 Query 364514 CGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGA 364573 || || | | |||| | ||||||||||||| || || |||| || || Sbjct 2802198 ----GGAGGCCAGCCTCTTAAACCAACAGATCTTTGAAACCATTTACTTTGGAGCCCTGG 2802253 Query 364574 CTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGG--GTCCCC 364631 || || || |||| ||| | || | || |||||||| || |||| Sbjct 2802254 AAGCCAGTTGCGAACTGGCCCAAAGGGACGGCACCTATGAAACTTATGAAGGAAGTCCGG 2802313 Query 364632 TCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691 || | |||||| | |||| || | ||| || ||||| | | | ||| | Sbjct 2802314 TCAGT--AAGGGAATTCTGCAGTACGACATGTGGGATAAAACGCCGACAGATCTTTGGGA 2802371 Query 364692 CTGGGATACGCT-ACG--TTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 |||| | || | | |||| | || || ||||| | | |||||||| | Sbjct 2802372 CTGGAAAGGTCTGAAGGAGTCCA---TCAAAAAACATGGAGTTAGAAACTCCCTTTTGGT 2802428 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || || |||||||| || || ||||| || || | || || ||||| | |||||| || Sbjct 2802429 GGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAATAACGAATCCTTCGAGCC 2802488 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | ||||| ||| ||||| || | || || || || || || || | || || || | Sbjct 2802489 CTATACAACAAATATTTATACAAGACGCGTACTCTCTGGCGAGTTCCAAGTGGTCAACCA 2802548 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | | | | |||| | | || | | |||||| || ||||||||| | || Sbjct 2802549 TCATTTGCTGAGGGATTTGACGGAGCTGGATTTGTGGGACGATGACATGAAGAATCAGAT 2802608 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTC--CAGAAGATCTGAAGCCT 364986 ||| || | || || | || || ||| | | ||| || ||| || || || Sbjct 2802609 CATATCCAGCAGGGGATCCATTCAAAATATTGAATCAATTCCACAAAAGGTCCGAGACC- 2802667 Query 364987 ATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCGATCGC 365046 |||||||||| || |||||||| || | | | ||| | ||||| || |||||| Sbjct 2802668 -TTTACAAAACAGTTTGGGAAATCTCAGTTAAATCAACAATTAAAATGGCCGCAGATCGC 2802726 Query 365047 GGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCTCCG 365104 ||||| ||||| |||||||||||| || || ||| || || | |||||| || | Sbjct 2802727 GGTGCGTTTATAGATCAGAGCCAGTCCTTCAA--TATCCATGTGGCAGAGCCAAACTATG 2802784 Query 365105 CCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 ||||| |||||||| ||||||||| |||||| | |||||||| || || Sbjct 2802785 GAAAGCTCACATCCATACATTTCTACTCCTGGAAAGCTGGTCTTAAAACCGG 2802836 >seq1218 Length=8613 Score = 118 bits (130), Expect = 3e-21 Identities = 215/311 (69%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 111583 AATTACAGAATGTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGA 111642 ||||| | ||||| ||||| |||||||| || ||| ||| | || || ||| | | Sbjct 1789 AATTAAA-AATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAA 1847 Query 111643 GTGCATGGAACCCAAATG-CATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGC 111701 |||| ||||| ||| | | |||||||| | ||||||| || || |||||| | |||| Sbjct 1848 GTGCCTGGAATCCAGAAGACATTGGAAGTA-TGGCACTCCCTCCGTGTCATGTAATGTTT 1906 Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 || ||||| || ||||||| | || ||||| |||||||||| || || ||| Sbjct 1907 CAATTTTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATT 1966 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 ||||| ||||||||||| || || ||||| || || | ||| |||||| || | Sbjct 1967 TTCCTTGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAA 2026 Query 111822 TTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGCGCATGTTTACACA 111881 | ||| | || ||||| || |||| | | |||||||| || |||||| Sbjct 2027 GAGGTAGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGT 2086 Query 111882 AACCACATTGA 111892 || || ||||| Sbjct 2087 AATCATATTGA 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303261754301000