Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq1188 132 1e-26 seq3266 114 4e-21 >seq1188 Length=7565 Score = 132 bits (146), Expect = 1e-26 Identities = 512/792 (65%), Gaps = 27/792 (3%) Strand=Plus/Minus Query 43481 ACCGACCGCCCGAGATTCGGATTCGTGATGTAGTAGTTGGCCGGATCGAGGTAGGCTTTC 43540 |||||| ||| ||||| || || || ||||| |||| |||||| | | | | ||||| Sbjct 850 ACCGACACCCCCAGATTGGGGTTGGTCATGTACCAGTTATCCGGATTGTGCTCGCCTTTC 791 Query 43541 GACTTCACCA----TCTCTTCCGGAAACTCGTACAGCACGCCGAGCGACTTCCGGTCGAC 43596 || ||| | |||| ||||| ||||| | || || || | || ||| Sbjct 790 ---TTACCCAGAATTTTCTTG-GGAAATTCGTAGATAAC--CGGCAGAAAACGGGGCGAA 737 Query 43597 --GATTTTGCCGTCACGCACGTCGCGGTAGTACTGCA-ACTTCTCTTTGAACACACCGGC 43653 ||| |||||||| |||||| |||| || | || || ||||| |||||||||||| Sbjct 736 TTGATCTTGCCGTCCCGCACGCCGCGCGCATATTCCAGACGGCTCTT-GAACACACCGGC 678 Query 43654 CGGCGGCTCGTCGCTTTGCGTTGTCAGG---ATGATGACCCACCCTTCATCCCGCGACAC 43710 ||| || || ||||| ||||| ||||||| | ||||| || || | Sbjct 677 AGGCTCTTCATCCGACTGCGTGCTCAGGTAAATGATGA---AGCCTTCCGGACGGGAAGC 621 Query 43711 CTGGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCCA 43770 ||| || || || ||||||| ||| || || | | | |||||||||| |||| Sbjct 620 GATGCCGCCAGTAGCTTCCATGAGCATGTTCTCAGCCGTGGGCTTCTTGCCGAACTCCCA 561 Query 43771 GTGCTCGTCGATAAGAATCTTTCC--TGACTT-CTTGCCCGATACCGTGTCAGTGTCGGC 43827 ||| || | ||||| || || ||| ||||||| || | || || Sbjct 560 CAACTCATCCACCAGAATG---CCGGTGGCTTTCTTGCCCACAACAGAAGATCCATCTGC 504 Query 43828 CGCAACCACCTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTTG 43887 ||| || ||||| | | ||| | | | |||||||| | ||||| ||| ||| || Sbjct 503 CGCCACAACCTTGAGTGTCGCCCCGGTTTCACGGTGCGTCACGATGCGGGTGTAATCCTG 444 Query 43888 GACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGTTTGAA 43947 ||||| ||||| | ||| || | || ||| |||||| || ||| || ||||| Sbjct 443 CACATGGAACAGGGCATCCAGTTCAGGGTCTGCCTTGATCATGTCCCGCGCAGGCTTGAA 384 Query 43948 GCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCCA 44007 | |||||| ||| | ||||| || || || | ||||| ||| | | ||||| Sbjct 383 GGCGTTGTCTGCGGCTTCCTTGGTTGGTGCCAAGATCAGAAACTCGGCCGATTGCCGCCA 324 Query 44008 ACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCTT 44067 || || | |||||| ||| | || ||||| || || || || || ||||| Sbjct 323 GTTCAGGATCAGAACCGTCAACATCACGCCCGCCGCAATGGTGCTCTTGGTGTTTTTCTT 264 Query 44068 GCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAGGCACC 44127 ||| | |||||| || |||||| ||||| |||||||| || ||| || || | ||| Sbjct 263 GCTTACCAGCAGGAAAAACTCGGTGATCATGCGCTTGCCGTTTCCGGG-TCATATGAACC 205 Query 44128 GAAAATGGCCGCGACGAAATCGAAGACCCACTGCTCGCTGCATTCGCCGAAGGTCGGCTT 44187 ||||||||| ||| | || || | ||| | || | |||| || | |||||| | Sbjct 204 GAAAATGGCGGCGGCAAAGTCCTTCAGCCAATCACGGCAGGATTCACCAATGGTCGGTTC 145 Query 44188 TCCCGGTAGGTCACAGACCCGCAGTTCCTTGAAGATCGCGACTGCCTGCTCAGCCTGATC 44247 ||| | | || || | ||| | ||||| | || | ||||| |||| || Sbjct 144 ACCCAGCACATCCACGATCTTCAGGGCATTGAAAACAGCCATCCCCTGCGCAGCGGCGTC 85 Query 44248 CGGGAAAATCGG 44259 |||||||| ||| Sbjct 84 CGGGAAAAGCGG 73 >seq3266 Length=1575 Score = 114 bits (126), Expect = 4e-21 Identities = 362/553 (65%), Gaps = 20/553 (4%) Strand=Plus/Minus Query 43597 GATTTTGCCGTCACGCACGTCGCGGTAGTACTGCA-ACTTCTCTTTGAACACACCGGCCG 43655 ||| || ||||| |||||| | || || | || || ||||| |||||||||||| | Sbjct 794 GATCTTACCGTCCCGCACGCCACGCGCATATTCCAGACGGCTCTT-GAACACACCGGCAG 736 Query 43656 GCGGCTCGTCGCTTTGCGTTGTCAGG---ATGATGACCCACCCTTCATCCCGCGACACCT 43712 || || || ||||| |||| || |||| | ||||| || || | Sbjct 735 GCTCTTCATCCGACTGCGTGCTCAGATAAATAATGA---AGCCTTCCGGGCGGGATGCAA 679 Query 43713 GGCCTCCGGTCGCCTCCATGAACATCGCTTCTGCGTTCGCCCTCTTGCCGAAGACCCAGT 43772 ||| || || |||||||||| ||| ||| || | | | |||||||||| |||| Sbjct 678 TGCCACCTGTTGCCTCCATGAGCATGTTTTCCGCCATGGGCTTCTTGCCGAACTCCCATA 619 Query 43773 GCTCGTCGATAAGAATCTTTCC--TGACTT-CTTGCCCGATACCGTGTCAGTGTCGGCCG 43829 |||| || | ||||| || || ||| ||||||| || | || | | ||| Sbjct 618 GCTCATCTACCAGAATG---CCAGTGGCTTTCTTGCCCACAACAGA---AGAGCCATCCG 565 Query 43830 CAACCAC---CTTCAACGACGCTCGACTGACGCGGTGCGTTATCGTGCGGATGTGATCTT 43886 || |||| ||| | | || | | |||||||||| | ||| ||| ||| | Sbjct 564 CAGCCACAACCTTGAGTGTTGCGCCGGTTTCGCGGTGCGTCACGACGCGAGTGTAATCCT 505 Query 43887 GGACATGAAACAGCTCGGACAGCTCTGCATCGGCCCGGATCATCCCCGCCGCCGGTTTGA 43946 | ||||| ||||| | || || | ||| ||| || ||| || ||| || |||| Sbjct 504 GCACATGGAACAGGGCATCCAATTCCGGATCTGCCTTGACCATGTCCCGCGCTGGCTTGA 445 Query 43947 AGCTGTTGTCCGCGACCTCCTTCGTCGGGGCGAGAATCAGGTGCTCTTCTTCCTCGCGCC 44006 || ||| |||| | ||||| ||||| || || |||||| ||| | | |||| Sbjct 444 AGGCATTGGCCGCCGCTTCCTTGGTCGGTGCCAGGATCAGGAACTCGGCAGATTGTCGCC 385 Query 44007 AACACAAAATGACCGCCGTCAGCATGATTCCGGCCGCGATCGTCGATTTCGTATTCTTCT 44066 | || || | | |||||| ||| | || || || || || || |||||||||| Sbjct 384 AGTTCAGGATCAGCACCGTCAACATCACGCCAGCAGCAATGGTGCTCTTGGTATTCTTCT 325 Query 44067 TGCTGATCAGCAGAAAGAACTCGCGGATCAGTTGCTTGCCGGTTTCGGCATCGTAGGCAC 44126 |||| | ||||| || |||||| |||| ||||||||||||| | || || | || Sbjct 324 TGCTCACCAGCAAGAAAAACTCGGTAATCATGCGCTTGCCGGTTTCCGGGTCATATGAAC 265 Query 44127 CGAAAATGGCCGC 44139 |||||||||| || Sbjct 264 CGAAAATGGCGGC 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143408233038000