Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5218 223 3e-53 seq5008 158 1e-33 seq5215 140 3e-28 seq5076 136 4e-27 >seq5218 Length=3038582 Score = 223 bits (246), Expect = 3e-53 Identities = 923/1436 (64%), Gaps = 40/1436 (3%) Strand=Plus/Minus Query 144736 GGCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTA 144795 ||| |||||||| |||||||| |||||||| || ||||| || || | ||| | ||| Sbjct 2802867 GGCAGCTGGCTTTGTGCGCAAGTAGTACATTCCGGTTTTAAGACCAGCTTTCCAGGAGTA 2802808 Query 144796 GTCGTGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTG 144855 | ||||| || || | | | || | ||||| |||||| | ||| | || || Sbjct 2802807 GAAATGTATGGATGTGAGCTTTCCATAGTTTGGCTCTGCCACATGGATATTGAAGGACTG 2802748 Query 144856 GCTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTCAT 144915 ||| ||||| || || || ||| || |||||||| | ||| | ||| | || Sbjct 2802747 GCTCTGATCTATAAACGCACCGCGATCTGCGGCCATTTTAATTGTTGATTTAACTGAGAT 2802688 Query 144916 TTCCCAAGCGGTCTTGTACAAACGTTTA--ATGTGGTCCGGAATGCCGTCAATCGCCTGA 144973 ||||||| | || ||||| || || | | | | ||||| ||||| ||| Sbjct 2802687 TTCCCAAACTGTTTTGTA--AAGGTCTCGGACCTTTTGTGGAATTGATTCAATATTTTGA 2802630 Query 144974 ATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTTAACTT 145032 || || ||| || | | || ||| ||| || ||| ||| | | || Sbjct 2802629 ATGGATCCCCTGCTGGATATGATCTGATTCTTCATGTCAT-CGTCCCACAAATCCAGCTC 2802571 Query 145033 GATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACG 145092 |||| || | || | || ||||| || || |||||||| | | || || | Sbjct 2802570 CGTCAAATCCCTCAGCAAATGATGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCT 2802511 Query 145093 CAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGT 145152 ||| | || | || |||| || || || |||||||| |||| |||||||| || Sbjct 2802510 TGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGT 2802451 Query 145153 CGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTC 145212 || ||| |||||||| |||||||| | || || | | || || || |||||| Sbjct 2802450 CGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGA 2802391 Query 145213 TTCCTTTAGCGTACC---CCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTA 145269 ||||| || ||| ||| ||||| || |||||| | |||||||||||||| Sbjct 2802390 CTCCTTCAG---ACCTTTCCAGTCCCAAAGATCTGTCGGCGTTTTATCCCACATGTCGTA 2802334 Query 145270 CTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT 145329 ||||| ||| |||| ||| | || || |||| | | | || |||| ||| Sbjct 2802333 CTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTG 2802274 Query 145330 GGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTT 145389 ||| || |||||||| || ||||| || || || ||||| || || || || ||| Sbjct 2802273 GGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTT 2802214 Query 145390 GAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAG 145449 | || | || || ||||| ||||| || |||| || | | || || || || Sbjct 2802213 TAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCATAAGAATCAGCGCGTCAGCCAG 2802154 Query 145450 CCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGAT 145509 ||||| | || | ||| || || ||||| | | ||| | || | ||| | | Sbjct 2802153 ACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGGCCTCCGGCAG 2802094 Query 145510 AGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTG 145569 || || || || || || ||||| | ||||| | || |||||| | | Sbjct 2802093 TGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTC 2802034 Query 145570 CCGCAACTTTTCAAAGTCAAACCGAGCCTC----GTCAACGACCACACAGCTATTGACGG 145625 | | ||||| |||||| | ||| |||| || ||| | |||| | Sbjct 2802033 CTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGCGTCA-----CAAACA--TGTTGAGAG 2801981 Query 145626 CGATCGACGCCAAATTACAAACTGCCGTCTCCTCGG-CGTCGCTGTATTGTACGATCTCG 145684 ||||||| |||||||| |||||||| |||| |||| || | ||| | || || || Sbjct 2801980 CGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGA-GTACTCGACAATTTCC 2801922 Query 145685 GCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCAC 145744 | ||||| ||| || ||||| ||||| |||| || || || || || || | ||||||| Sbjct 2801921 GTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCAC 2801862 Query 145745 GCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAAC 145802 ||||||||| |||||||||| || |||||||||||| |||| ||| | ||| ||| Sbjct 2801861 GCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAAC 2801802 Query 145803 GGTGCAAGTCCTGCGCACGCAC-CTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTG 145861 |||| ||| || || | | | | | ||| ||||| | |||||||||| Sbjct 2801801 --CACAAGGACTGTGCTTTTACAGTTCGGTTTG-CGCGTCCCTCCTGTTCGTATTTCACA 2801745 Query 145862 TAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACAC 145921 || |||| |||||| | || | ||| || || || || |||| |||||| Sbjct 2801744 TATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAG 2801685 Query 145922 ATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGC 145981 | |||||||| | | ||||| | || || | ||| || | |||||| | |||||| Sbjct 2801684 AAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGG 2801625 Query 145982 GCGTACATCAAGTCGCGCGCT--TTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAA 146039 || || | ||| || || ||| ||| || || || | || ||| | | | Sbjct 2801624 GCATAGAACAAATCACGGGCTCGATGC--TCTTCCTTGCCAGTATTCTTCTTAAGGTCCA 2801567 Query 146040 GCACACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGT 146098 | | ||| | | | |||| ||||| || || | ||| | ||| | |||||| || Sbjct 2801566 G-AAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGC 2801508 Query 146099 TTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGG 146151 ||| |||||||| ||||| | ||| ||| |||||||||||| | || ||| || Sbjct 2801507 TTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGG 2801452 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | |||||||| || || | ||| |||||||| |||||||| || || Sbjct 2718271 CCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAG 2718330 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 2718331 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 2718390 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | ||||| | | |||| Sbjct 2718391 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 2718449 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 2718450 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5008 Length=644625 Score = 158 bits (174), Expect = 1e-33 Identities = 174/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| ||||| ||| ||||| | || |||||||| || |||||||| ||| Sbjct 342989 GCCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 342930 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 342929 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 342870 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | ||| | ||||||| || ||||| Sbjct 342869 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGAC 342810 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || ||||| ||||||||| || Sbjct 342809 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 342758 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||| ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 342761 GCCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 342702 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 342701 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 342642 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||||| | ||| | ||||||| || ||||| Sbjct 342641 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGAC 342582 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || || || |||||||| ||||| Sbjct 342581 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 >seq5215 Length=2160492 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 1797509 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797568 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| |||||||||||||| || ||| Sbjct 1797569 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797628 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || |||| | ||| | ||||||| || ||| | Sbjct 1797629 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACC 1797688 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | |||||| || || | ||||| || || |||||||| Sbjct 1797689 TCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||| ||||| || || | || ||||||||||| |||||||||||| Sbjct 1797053 CCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAG 1797112 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| |||||||||||||| || ||| Sbjct 1797113 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797172 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || |||| | ||||| Sbjct 1797173 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797232 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || | || || ||||| |||||||| Sbjct 1797233 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | |||||||||||| || |||||||| ||| Sbjct 1797281 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797340 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| |||||||||||||| || ||| Sbjct 1797341 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797400 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || |||| | ||||| Sbjct 1797401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797460 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| ||||| || | || || ||||| |||||||| Sbjct 1797461 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5076 Length=596799 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| ||||| | ||| | |||||||||||| || |||||||| || Sbjct 35316 CCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 35257 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||||||| || || ||| Sbjct 35256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGG 35197 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 35196 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACC 35137 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || || || ||||| ||||| || |||||| Sbjct 35136 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATG 35089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471980349120000