Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3259 136 3e-27 seq1405 132 3e-26 seq3612 107 1e-18 seq5076 104 2e-17 seq5008 100 2e-16 >seq3259 Length=1238 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 639 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTCGT 580 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 579 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 545 >seq1405 Length=1013 Score = 132 bits (146), Expect = 3e-26 Identities = 86/94 (91%), Gaps = 4/94 (4%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG----GGGGTAATCTCGTT 25957 |||||||||||||||||||||||||||||||||||||||||| | | ||||||||| Sbjct 555 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGACAGAAGGAATCTCGTT 496 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 495 AATCCATTCATGCGCGTCACTAATTAGATGACGA 462 >seq3612 Length=22961 Score = 107 bits (118), Expect = 1e-18 Identities = 191/276 (69%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 || ||| | || || || |||||||| ||| | | || ||||||| || | || Sbjct 1316 AATGAGAGGTTTATAGTAAACGGATCCCATGATGTTAATAAATTGCAGGATTTGTTGGAT 1375 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT- 6493 || ||||||||||||||||| | |||| ||||| || |||||||||| | | |||| Sbjct 1376 GGATTTATTCGCAAGTTTGTATTATGTCCTGAATGTGACAACCCGGAGA-CAAATTTATC 1434 Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553 |||||| |||| | | || || |||||| ||||| || ||||||| ||||| Sbjct 1435 AGTGTCTGCCAAAAACCAGACTATTTCTCAGTCGTGCAAGGCATGCGGTTTTCATGGTTT 1494 Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCACCTAAAGACCC 6613 | | || |||||| ||||||| || || |||| ||||| ||| || | |||| Sbjct 1495 ATTAAAAGTAAACCACAAAGTCAACACATTTATTGTGAAAAATCCACCATCTCTAAACCC 1554 Query 6614 TAGCACGCAGGGTTCTTCGCAAAATAAGAGCAACCG 6649 | | | ||||| || |||| || | | |||| || Sbjct 1555 AACCTCTCAGGGCTCATCGCTAACTGAAGGCAAGCG 1590 >seq5076 Length=596799 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | ||||| ||| || || |||||| || || ||||| || | Sbjct 35318 TACCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 35259 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | || || |||||||| || || || || ||||||| || Sbjct 35258 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGG 35199 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||||||||| || || ||||||||||| || || || | |||| Sbjct 35198 GGATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAA 35139 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || | || || || || || || | |||||||||||| || |||||| Sbjct 35138 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATG 35089 >seq5008 Length=644625 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || | || ||||||||||||||| | |||| |||||| || || ||||| || ||| Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | ||| |||| || | || || ||||| || || || || || ||||| | |||| Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || |||| || ||||| || || Sbjct 342868 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342809 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| || ||||| ||||||||| Sbjct 342808 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATG 342761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924748070500