Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5213 98.7 9e-16 seq5076 95.1 1e-14 >seq5213 Length=770604 Score = 98.7 bits (108), Expect = 9e-16 Identities = 195/289 (67%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 || ||||| |||||| |||||||| || | || | ||||| || ||||| Sbjct 538650 AATTTACGTCGACAGCCTTGATAGTTCATGTAGCGTATCTTTCCAAAGATAGATCGTTCC 538591 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | |||| || | || | || |||||||| || ||||||||| || || Sbjct 538590 TTCCATCCCATGTCATGGATTCCCCCGATGGACCACATGCACCCCACATAACCATTGGGG 538531 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 || || || |||| ||||| | ||| || || | ||||| || ||| ||| || Sbjct 538530 TCTCGTCCGTCCAGACTGTACTTATCATTAAGTAGAATGGCGTACTCCAGGGCCTGCTCA 538471 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | |||| || | || || || |||||||||||||||| | | |||||||| Sbjct 538470 GGAGTCTCGCTCCACTCGAGGATCTTTTTAGCCCAGTACATGCGCAGGAAGCCGTGCATT 538411 Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGT 51277 |||||||| | || || ||||||||| ||||||| ||||||| Sbjct 538410 TTGCCCTCACGTACTAGTTGTAGTTGAGCCGAATTCCACAGGTCGTCGT 538362 >seq5076 Length=596799 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || || || ||||||| |||| || ||| | Sbjct 35087 ACCATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCT 35146 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| |||||| ||||| || ||| ||||||||||| || || || || Sbjct 35147 TCGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGAT 35206 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||||||| || | || |||| ||||| | || ||| Sbjct 35207 CAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 35266 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || ||| | ||||| Sbjct 35267 AACATCCAGAAGGAGTCGACCCTGCATCTGGTGCT 35301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433298953482500