Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5403 275 7e-69 seq5367 118 1e-21 seq4617 118 1e-21 >seq5403 Length=2915140 Score = 275 bits (304), Expect = 7e-69 Identities = 604/894 (68%), Gaps = 17/894 (2%) Strand=Plus/Minus Query 92743 TAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCACAT 92802 |||||||| || ||||| ||||| |||||||| ||| |||| || || | || ||| Sbjct 122398 TAGAAATCGGCGTCTAGGGTAAAGACATTGTCCAGTCGATTGGTAGCCA---CGCC-CAT 122343 Query 92803 TTT-TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGA 92861 ||||| || || || || ||||||||||| || ||||| || |||| || ||| Sbjct 122342 ACGCTGGTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCAT 122283 Query 92862 ATTCACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCAC--CGATCAACTCGTAC 92917 | || | ||| |||||||||| ||| || ||||| | || || ||| | Sbjct 122282 CTCCATGAAATTGAAAGGATTCTTGGTGTTGTAGA--TTTTCCCGACGCCCAGCTCTACC 122225 Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGA 92977 | || | || || || ||||| ||||| || |||||||| || || ||||| || | Sbjct 122224 AGTAGCCGGTCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATC 122165 Query 92978 AGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG 93037 | | || || | ||||| || | ||| || | || || | || || || | | Sbjct 122164 AAATTCACGGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATG 122105 Query 93038 ATTTCTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC- 93094 || || || | | || | |||| || || |||| || | | |||||| |||| Sbjct 122104 ATCTCGATGATGCGCTCCCGAC--GTGGCTTCTGGACGAGATGCTGGAACATTA-GCACA 122048 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 ||||||||| || | |||||||| | || |||| ||| ||| ||| || | ||| Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | ||| ||||| ||||| ||||| || || || || || ||||| || || || Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 || || ||||| ||||| || | || || || |||| || || || || | |||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || | ||||||||||| || ||| | || | ||||| || || || || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 ||||| || |||| || | ||||| ||||| || ||||| | | | ||||| || Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || || || ||||| || |||||||| || || ||||| | ||| ||||||| ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || || ||| || | ||| || ||||| || || || || |||||||| || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 || |||| | || || || || ||||| || ||||| | |||||||| Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTA 121568 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 ||||| || ||||| || || || ||||| ||||| || || ||||| || ||| Sbjct 121567 AGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTT 121514 >seq5367 Length=999819 Score = 118 bits (130), Expect = 1e-21 Identities = 79/87 (91%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 749524 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAAAGAGAGC 749583 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 749584 GTGGGTTCGAACCCCACACCTGACAAA 749610 >seq4617 Length=1232841 Score = 118 bits (130), Expect = 1e-21 Identities = 78/85 (92%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC-GGGAGCG 126323 |||||||||||||||| ||||||||||||||| |||||| ||||||| ||| | ||||| Sbjct 410341 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGTTTTAAGCACTGGTTCTCTCTGAGAGCG 410400 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 410401 TGGGTTCGAACCCCACACCTGACAA 410425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822515820000