Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5218 248 7e-61 seq5215 131 1e-25 seq5008 127 2e-24 seq5076 114 1e-20 >seq5218 Length=3038582 Score = 248 bits (274), Expect = 7e-61 Identities = 706/1080 (65%), Gaps = 5/1080 (0%) Strand=Plus/Minus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 |||||| |||||||| | ||| |||| || || ||||| |||||||| |||||||| || Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| | ||| |||||| | || | || || | || | | | | ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | || | ||||| || || || || ||||| ||||| | |||||||| || || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| ||| ||| |||||||| || ||||||||||| |||| || | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCTT 2802655 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 || ||| ||| |||||| || || | | || || | | || || | || ||| Sbjct 2802654 TTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTCAT 2802595 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAAT-CGTCGGTCAAGTATTTGTTTATTACTT 129136 | |||| |||||| ||| | |||||| | || | ||| | | ||| | |||| Sbjct 2802594 GTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAG-CAAATGATGGTTGACCACTT 2802536 Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196 | || || || | | ||||| | ||||| || | || | ||||| || |||| Sbjct 2802535 GGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATT 2802476 Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256 | || || || | |||||||| || | || |||||||| |||||| |||| |||| Sbjct 2802475 CGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGT 2802416 Query 129257 TTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGG 129316 ||| | || || | ||| ||| | || | | |||||||||| | ||| | Sbjct 2802415 TTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTGTCG 2802356 Query 129317 GTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGG 129376 | || | || ||||| |||||| |||| || ||| |||| | ||||| || | Sbjct 2802355 GCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAG 2802296 Query 129377 AATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAA 129436 || | ||||| || |||| ||||||||| ||||||| || ||||| |||| Sbjct 2802295 TTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAA 2802236 Query 129437 TTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCA 129496 | ||||| || | ||| || | |||||| ||||||||||| || ||||| Sbjct 2802235 TGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCA 2802176 Query 129497 ACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTAT 129556 | | | ||| |||| ||| |||| || | || || || ||||| || || Sbjct 2802175 TAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAAT 2802116 Query 129557 TGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTCT 129616 |||| || | ||| | || || || |||| || ||||| || || || | || Sbjct 2802115 TGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTC 2802056 Query 129617 TGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGT 129676 || |||| | || || || | || | | ||| || | || | | | | || Sbjct 2802055 TGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATA--TGTTTTCTCTGGCGT 2801998 Query 129677 CGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCAC 129736 | ||||| |||| | ||||| ||||||||||| || ||| | |||| | Sbjct 2801997 C-ACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAG 2801939 Query 129737 TGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGAT 129796 ||||||||||||||| | ||||| |||||| |||||||||||||| | || ||| | Sbjct 2801938 AGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGT 2801879 Query 129797 TACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCG 129856 | || || |||||| || || ||| | | |||||| || |||| || || ||||||| Sbjct 2801878 TGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCG 2801819 >seq5215 Length=2160492 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| ||||| || || || ||||| |||| | || ||||| || Sbjct 1797738 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCC 1797679 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | || | ||||| || || |||||||||||||| || || || || Sbjct 1797678 TCCGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGAC 1797619 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || || ||||| || ||| | |||||| ||||||| ||||||| ||| Sbjct 1797618 CAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTAC 1797559 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || ||| | || || || | || |||| || || Sbjct 1797558 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 1797509 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || ||||||| || || || | || Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 1797219 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797160 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | |||||| ||||||| |||||||||||||| Sbjct 1797159 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAAC 1797100 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | || || || | || |||||||||| Sbjct 1797099 ATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGG 1797053 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| || ||||||| || || || | || Sbjct 1797507 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797448 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| || || || || || Sbjct 1797447 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 1797388 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || ||||| || ||| | |||||| ||||||| ||||||| |||||| Sbjct 1797387 CAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACAAC 1797328 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || ||| | || || || | || |||| || ||| Sbjct 1797327 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGGT 1797280 >seq5008 Length=644625 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || || | || || || || |||| || || || || || Sbjct 342531 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 342590 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||||||| | || | |||| || || || |||||||||||||| || || ||| Sbjct 342591 TCCGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGAT 342650 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | ||||| |||||| | ||||| ||| Sbjct 342651 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTAC 342710 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || |||||| | || || || | || | |||||||| Sbjct 342711 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTCCGCGGAGG 342760 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || || || Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || || ||||||||||| || || || ||||| Sbjct 342822 GATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 342881 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| |||||| | ||||| |||||| Sbjct 342882 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 342941 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || ||||| | ||||| || ||||| ||||||| || Sbjct 342942 ATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGG 342988 >seq5076 Length=596799 Score = 114 bits (126), Expect = 1e-20 Identities = 173/246 (70%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 |||| |||| || | |||||||| || || ||||| | || || || || |||| Sbjct 35072 TTTTTTACAGCCGTCACCATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACC 35131 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || || || || | | || ||| | || || | || || || || ||||| || Sbjct 35132 CTCGAGGTTGAGCCTTCGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAA 35191 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| || |||||||| || ||||| || ||||||||||| ||| | |||||| |||| Sbjct 35192 GGTATCCCCCCCGATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGC 35251 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGC 22440 ||| | || || |||||||| || || || || ||| | ||| | || | || ||||| Sbjct 35252 ACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGC 35311 Query 22441 GGAGGT 22446 || ||| Sbjct 35312 GGTGGT 35317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419699865107500