Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5413 107 4e-18 seq5073 91.5 3e-13 seq5063 91.5 3e-13 seq5069 89.7 1e-12 seq5059 89.7 1e-12 seq5214 84.2 4e-11 seq4541 84.2 4e-11 >seq5413 Length=1192065 Score = 107 bits (118), Expect = 4e-18 Identities = 327/503 (65%), Gaps = 2/503 (0%) Strand=Plus/Plus Query 218504 ACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGG 218563 ||||| || | | ||||||||| || |||| | |||| ||||| ||| | Sbjct 479773 ACATCACCTACGCGGACTTCATCAACCTGGAGTTGGTTCTCTTCTCTAACGCCGATAACG 479832 Query 218564 AGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTG 218623 |||| || |||||||| | ||||||||||| ||||| ||||| ||| || | || Sbjct 479833 AGCGCTCCATTCCCAGTCTTGTGGATGGCCTGAAGCCCGGCCAGCGCAAGGTCATGTTCA 479892 Query 218624 CCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTAT 218683 || |||||| | ||| | |||| | ||||| || ||||| || |||| || Sbjct 479893 CCTGCTTCAAGAGAAACGATAAGCGAGAAGTGAAGGTAGCCCAGTTGTCCGGTTCAGTGG 479952 Query 218684 CCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGG 218743 |||| || || | |||||| ||||| ||| |||||| | || || ||| Sbjct 479953 CCGAGATGTCGGCCTACCACCACGGAGAGGTCTCACTGCAGATGACTATCGTGAATTTGG 480012 Query 218744 CACAGGACTATGTGGGCAGTAACAACATGAACTTGC-TGCTCCCCAACGGTCAGTTTGGT 218802 |||| ||||||||||| |||||||| || ||| || || | | |||||||| ||| Sbjct 480013 CACAAAACTATGTGGGCTCCAACAACATTAATCTGCTTGAGCCACGA-GGTCAGTTCGGT 480071 Query 218803 TCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCG 218862 |||| | ||| || |||||| | ||| ||| | || || || || | |||| Sbjct 480072 ACTCGCTTGACGGGAGGCAAGGATTGCGCTAGTGCTCGTTACATTTTCACCCTGATGTCC 480131 Query 218863 CCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGAC 218922 || | || | | | | | ||| |||||| ||| || |||| | || Sbjct 480132 CCACTAACCAGATTGATTTACCATCCCCTTGATGATCCGCTGCTCCAGTACCAAACCGAT 480191 Query 218923 GATGGTTCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAAT 218982 || || ||||||||| ||||||| | ||| |||||| | | || ||||| Sbjct 480192 GACGGGCAGAAGATTGAGCCGTTGTGGTATCTTCCTATTATTCCCATGGTTCTGGTAAAC 480251 Query 218983 GGTGCCAATGGTATCGGGACAGG 219005 |||||| | ||||| || || || Sbjct 480252 GGTGCCGAGGGTATAGGCACTGG 480274 >seq5073 Length=2625208 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 302478 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 302419 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 302418 CCCCACGTTGGGC 302406 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 303012 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 302953 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 302952 CCCACGTTGGGCGGA 302938 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 781413 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 781354 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 781353 CCCACGTTGGGC-GAAG 781338 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 301916 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 301857 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 301856 CCCACGTTGGGC 301845 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 781788 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 781729 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 781728 CCCACGTTGGGC 781717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 782258 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 782199 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 782198 CCCACGTTGGGC 782187 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 782627 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 782568 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 782567 CCCACGTTGGGC 782556 >seq5063 Length=337993 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 91411 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 91352 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 91351 CCCACGTTGGGC-GAAG 91336 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 110632 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 110691 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 110692 CCCACGTTGGGC 110703 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 115210 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 115269 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 115270 CCCACGTTGGGC 115281 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 120142 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 120201 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 120202 CCCACGTTGGGC 120213 >seq5069 Length=657865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 647378 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 647319 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 647318 CCCCGCAAGGGA 647307 >seq5059 Length=3196756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 177666 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 177725 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 177726 CCCACGTTGGGC 177737 >seq5214 Length=1588277 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142057 CTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCCCCG 142116 || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 315937 CTTTGGCGCAGCGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATCCCCG 315996 Query 142117 CCAG 142120 | || Sbjct 315997 CAAG 316000 >seq4541 Length=145520 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| | ||||||||||| Sbjct 105585 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGCTCGTGGGTTCGG 105526 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 105525 GCCCCACGTTGGGC 105512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027764369625500