Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5215 178 2e-39 seq5008 176 8e-39 seq5218 170 4e-37 seq5076 140 6e-28 seq5181 96.9 6e-15 seq5413 84.2 4e-11 >seq5215 Length=2160492 Score = 178 bits (196), Expect = 2e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||||||||| || || | |||||||| || || ||||| ||||||||||| |||||||| Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 ||| || | ||||| || | |||||| |||||||| || | | || ||||| || || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| ||| |||||||| | | || || Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGAC 1797231 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| |||||||| || || || | |||||| ||||| |||||||| Sbjct 1797232 CTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 178 bits (196), Expect = 2e-39 Identities = 179/233 (77%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || || ||||| || |||||||| || |||| Sbjct 1797507 TTCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 1797566 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | ||||| || | |||||| |||||||| || | | || ||||| || | Sbjct 1797567 AGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 1797626 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| ||||||||||| ||||| || |||||| ||||||||| || | | || | Sbjct 1797627 GGATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCA 1797686 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | |||||||||||||||||||| || | ||| || || || ||||||||| || Sbjct 1797687 CCTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCATTTTG 1797739 >seq5008 Length=644625 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || ||||| ||||| || | |||||||| || |||||||| || ||||| Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || || Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||| || | | || || Sbjct 342868 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342809 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || || |||||||||||||| |||||||| Sbjct 342808 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 >seq5218 Length=3038582 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||||| |||||||| | || ||||| || || |||||||| || ||| Sbjct 2718271 CCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAG 2718330 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || || || || ||| Sbjct 2718331 AGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 2718390 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| |||||||| || | | ||| || Sbjct 2718391 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 2718450 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 2718451 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5076 Length=596799 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| || || || ||||| || |||||||| || || || Sbjct 35316 CCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 35257 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| ||||| || || || | || || ||||| || Sbjct 35256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGG 35197 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| || ||||| ||||| || |||||||||||| | | || || Sbjct 35196 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACC 35137 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || |||||||| || ||||| || ||||| Sbjct 35136 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5181 Length=2482950 Score = 96.9 bits (106), Expect = 6e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 268364 CGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGG 268423 ||||| ||||||| || || || |||| |||||| | ||||| ||||||||||||||| Sbjct 2114942 CGAGTAATTTTTCTAGTGACAAAGTTCTCTCCACGTCGCGGGCTTTCGTGGTTGAAGAGG 2115001 Query 268424 ATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCA 268483 ||||| || || || ||||| || |||||||||||||| | || |||| | || Sbjct 2115002 ATGCCATTACAGGCATACATGTTGTAGGCCTCACGGTAGTTAATAACGATCCAAAACCCA 2115061 Query 268484 AACATCTTTGC 268494 ||||||| || Sbjct 2115062 TACATCTTGGC 2115072 >seq5413 Length=1192065 Score = 84.2 bits (92), Expect = 4e-11 Identities = 209/308 (68%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 176229 GGGGACAGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCT-CCGTGAAGGCG 176287 ||||||| | ||||| || || | |||| || | ||||||||| |||| || ||| Sbjct 480133 GGGGACATCAGGGTGAAAATGTAACGAGCACTAGCGCAATCCTTGCCTCCCGTCAA-GCG 480075 Query 176288 GGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTG 176347 | |||||| || || || || ||||| ||| ||||| || || ||||| |||| ||| Sbjct 480074 AGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTTGTTGGAGCCCACATAGTTTTG 480015 Query 176348 GGCC--ATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTC 176405 ||| |||| || || | ||| || || |||| |||||||| ||| | | || Sbjct 480014 TGCCAAATTC--ACGATAGTCATCTGCAGTGAGACCTCTCCGTGGTGGTAGGCCGACATC 479957 Query 176406 TC-ACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAA 176464 || | || | |||| ||||| || || || | |||| | ||| | ||| || Sbjct 479956 TCGGCCACTG-AACCGGACAACTGGGCTACCTTCACTTCTCGCTTATCGTTTCTCTTGAA 479898 Query 176465 CGCCGAGAACAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGAC--GACCGACGGAATG 176522 | ||||| | ||| ||||| ||||||||| ||||| || ||| | |||||| Sbjct 479897 GCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCATCCACAAGACTG--GGAATG 479840 Query 176523 GAACGCTC 176530 || ||||| Sbjct 479839 GAGCGCTC 479832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921559038460000