Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5403 257 3e-63 seq5218 156 8e-33 >seq5403 Length=2915140 Score = 257 bits (284), Expect = 3e-63 Identities = 501/732 (68%), Gaps = 21/732 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||||||||| || || || || || || || || ||||| |||| | |||| Sbjct 121620 CTGGCCTTCTTTGCTGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCTTCAGT 121679 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||| ||| | ||||| ||||| || || |||||||| || ||||| || ||| Sbjct 121680 CAGGAGGTTCAGGTCACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAAC 121739 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 || ||||| ||| ||||| ||| || |||| ||||| |||||| | |||| Sbjct 121740 GTACACTCGGAGATGTACAGTGTACTCATCGACACTTACATTAGAGATCCCCACCAGCGC 121799 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | |||||||| ||||| || |||||||| | ||| ||||| || |||||| Sbjct 121800 GAGTACCTGTTCAATGCCATTGAAACGATGCCGGCGGTGAAGCGCAAGGCCGATTGGGCG 121859 Query 42663 CTCAACTGGATC----GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTAC 42718 || ||||||| | |||| || | || || ||| | | | || ||| | Sbjct 121860 CTGGCCTGGATCTCCTCAAAGTC----TGCCAACTTTGGAGAGCGCATCATCGCTTTTGC 121915 Query 42719 CGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-A 42777 ||||| ||||| ||||||||| || ||||||||||||||||||||| ||| || Sbjct 121916 TGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCG 121975 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 |||| | |||||| || || |||||||| ||||| || ||| ||||||||| || || | Sbjct 121976 AGGTCT-GATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTC 122034 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGC--CCTCGAAGGA 42895 | | |||||||| || ||||| | || ||| || |||| | ||| ||| Sbjct 122035 ACTGCGACTTTGCTGTGCTAATGTTCCAG---CATCTCGTCCAGAAGCCACGTCG--GGA 122089 Query 42896 GCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTC 42955 ||| || | |||||| || || ||||| || || |||||||||||| ||| | Sbjct 122090 GCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCA--CAGAC 122147 Query 42956 GC--TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTAC 43013 || |||||||| || ||||||||||| |||| | |||| | |||||| | | | Sbjct 122148 GCCTTGCCCGTGAATTTGATCGGCATGAACTGCGACTTGATGTCACAATACATCGAATTC 122207 Query 43014 GTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 || || |||| || ||| || |||| || | |||||||||| | || Sbjct 122208 GTTGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAATCCT 122267 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 ||| | || ||||||| |||||| |||| || ||||||||||| || || ||| || Sbjct 122268 TTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAGGTG 122327 Query 43134 GCCGACTACCAG 43145 | || |||||| Sbjct 122328 GGAGAGTACCAG 122339 >seq5218 Length=3038582 Score = 156 bits (172), Expect = 8e-33 Identities = 842/1329 (63%), Gaps = 49/1329 (4%) Strand=Plus/Minus Query 244299 CCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGG 244358 |||||||||| ||||||| | ||||| ||||| || || || || || || |||| Sbjct 2802346 CCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAAGTTTCATAGG 2802287 Query 244359 GACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGA 244418 ||||| | |||||||| | || || | || ||||| | |||| ||||| || | Sbjct 2802286 TGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAA 2802227 Query 244419 AGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGA 244478 ||||| | ||| | | || ||||| ||| | |||| | ||| | || | Sbjct 2802226 AGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAACGCATAAGAATCA 2802167 Query 244479 AGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCA 244538 |||| ||||| ||||| ||||||||||| || || | || | ||||| | Sbjct 2802166 GCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCT 2802107 Query 244539 TGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA 244598 |||| || |||| ||||||||||| || || | ||| |||||||| | || | | Sbjct 2802106 TGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCG 2802047 Query 244599 TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGA 244658 | ||| | || |||| | | | || || | | ||| ||| Sbjct 2802046 TCTTTGTGACCT---CCTTAAGCT---TTTTGAAGTCATATGTTTTCTC-----TGG--- 2802001 Query 244659 TCCTCACAAACTCGTTGAGGGCGA-CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAG 244717 | |||||||| |||||| |||| || | |||| ||||| || || | ||| || | Sbjct 2802000 -CGTCACAAACATGTTGAGAGCGATCGAT-GCCAAATTGCAAACTGCAATCTCGTCGGGC 2801943 Query 244718 TTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGG 244777 | ||||| |||||| || ||||| || |||||||| || |||||||||| || ||| Sbjct 2801942 GAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGT 2801883 Query 244778 TGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGC 244837 || ||| ||| |||||| ||||||||| |||||||| | || || ||||| | Sbjct 2801882 TGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACT 2801823 Query 244838 TGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCC 244897 || | | | || | | ||| | | | || || || || | | || ||| Sbjct 2801822 TGCGACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTCCC 2801763 Query 244898 TCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCG 244957 || ||||| || || || ||||| |||||| || || | || || Sbjct 2801762 TCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCA 2801703 Query 244958 GGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAG 245017 ||||| || || | || ||| || | | ||| || | | ||||||| Sbjct 2801702 GGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAG 2801643 Query 245018 AGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTG 245077 || || || ||||| ||||| | ||| | || | || | ||||| ||| |||||| Sbjct 2801642 AGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTA 2801583 Query 245078 TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCG 245137 |||||| | || |||| ||| ||||| || || ||||||||||| | || | || Sbjct 2801582 TTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCA 2801523 Query 245138 AGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAG-CGCGTTG---AA 245193 | ||| || ||||||||| || ||||| |||| | | ||| | | ||||| || Sbjct 2801522 AAGGCTCCCGGCCGCTTGCCACCACCCTGATCCA----CATATCGTGCCACGTTGTTAAA 2801467 Query 245194 GATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC 245253 || | ||| |||| || | || || || ||||||||| || ||| | | || Sbjct 2801466 GACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACC 2801407 Query 245254 CTTGCCCCTGAGGTTGCTGATGGACAT----GCCTAGTCCGCCGGCGTGCTTGGAGATGA 245309 ||| | | | | | |||||||| || | || || || ||||||||| | Sbjct 2801406 CTTTGCAC---GAATAC-AATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCA 2801351 Query 245310 GGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCA 245369 |||||| || | | | || ||||| || ||| || ||||| | || | Sbjct 2801350 TGGCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGA 2801291 Query 245370 GAAAGCAGGAGGACAGCTGGGG----CTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTG 245425 |||| || || || |||||||| ||| ||| || | || || || || Sbjct 2801290 GAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGC----GGCAAATAGCGTTGGCGAA 2801235 Query 245426 GCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTG 245485 ||||| || || || || ||| || || |||||||| | ||| ||||||| Sbjct 2801234 GCGTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCT 2801175 Query 245486 TCGCCGTGGATCTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGG-CG-TC-TCGATGGG 245541 || || ||||| | || ||| | ||| || |||||||||| || || |||| Sbjct 2801174 TCTCCATGGATTCCGATTGC-CACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTT 2801116 Query 245542 TCCCTCGGGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTA 245601 || | | | || || | ||| || ||||| || |||||||| |||||||| ||| Sbjct 2801115 ACCATTGATT---TTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTA 2801059 Query 245602 GCCAAAGTC 245610 |||||||| Sbjct 2801058 ACCAAAGTC 2801050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944274276680000