Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq5200 163 3e-35 >seq5200 Length=2197361 Score = 163 bits (180), Expect = 3e-35 Identities = 419/636 (66%), Gaps = 24/636 (4%) Strand=Plus/Minus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 || |||||||| || ||| || ||| | | |||||||| | || || ||| Sbjct 1469464 GGGAAGGGACGCGGCTCGCGTTCGAGTTGCTCCTGAAGTGGCTCCACGTGATTTAGGTAA 1469405 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | || | ||||||| ||||||| ||| || || || | |||||||| ||||||||| Sbjct 1469404 ACATGCGTGTCTCCCATGGTGTGAACAAAGTCACCAGGCTTCAGACCAGTGACATGAGCA 1469345 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | |||||| || || |||| ||| ||||||||| || || |||||||| |||||||| Sbjct 1469344 ATCATATAGGTCAACAGGGCGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCCATGTCG 1469285 Query 20315 CCCGACCTC--TGATACAGCTGACAGGAAAGCTCAC------CGTCAGCTACATAAAATT 20366 | || || ||||||||||| ||||| || || | | | || |||||||| | Sbjct 1469284 GC--ACTTCGTTGATACAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAAAACT 1469227 Query 20367 GACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCAC 20426 || || |||| || || || | |||||| | | |||| ||| |||||||| Sbjct 1469226 GAGCCAAGCAGTGGCACGGGGGCAATGCCATCTTTGGAATGTCCAGCGGATTCCACGCCG 1469167 Query 20427 ACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATT 20486 |||| ||||| | || ||| ||||| || || || || | || | | || || Sbjct 1469166 ACATGATGATACGTCGATCCGAAGGATTGTTCTTGATCGTGTCAATAACCTGCTTCAGTT 1469107 Query 20487 GGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCC 20546 | || | |||| ||| |||||| | || | || | || |||||||||| Sbjct 1469106 GATCGATGCCCTTGCCGCGGTAGTCATCGTCACAGGTAGTATATTCAGCACCAAAGTGCC 1469047 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCC 20606 ||| ||||||||||| || || ||||| || || | | || || | || || Sbjct 1469046 GCCATTGGAAACCGTATACCGGGCCCAAGTCACCAACGGCGCGGTCCGTGTGTCCCAGCT 1468987 Query 20607 CGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCTGTTCTTG------ 20660 | | ||||||||||||| || |||| ||||| || | || ||||||| Sbjct 1468986 TGTCTAGGAACTCCCTGGTGCTATTTCCATCCCAGATGTGAAC----GTTCTTGGCCTGC 1468931 Query 20661 -AAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACTACGCCT 20719 |||||| | | || || | || || |||||| | || ||||| |||| || Sbjct 1468930 AAAAGCT---TCGCATCTGTCTTGCCGGCCACAAACCACAACAACTCTTCGGCTACTGCT 1468874 Query 20720 CGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAG 20755 || | || || ||||| ||||| | | ||||||| Sbjct 1468873 CGGAAGAAGACGCGCTTAGTGGTCAACAGGGGAAAG 1468838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441342455620000