Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5213 87.8 1e-12 seq5076 86.0 5e-12 seq5008 82.4 6e-11 >seq5213 Length=770604 Score = 87.8 bits (96), Expect = 1e-12 Identities = 177/261 (68%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 ||||||| |||||||| | || || || || ||||| || ||||| | |||||| Sbjct 538371 TGTGGAATTCGGCTCAACTACAACTAGTACGTGAGGGCAAAATGCACGGCTTCCTGCGCA 538430 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTACG 37959 |||| ||| || || || | || ||| || | || || || || | |||| Sbjct 538431 TGTACTGGGCTAAAAAGATCCTCGAGTGGAGCGAGACTCCTGAGCAGGCCCTGGAGTACG 538490 Query 37960 CCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCT 38019 ||||| || |||||||||||||| ||||||| || || ||||| ||||| || || | Sbjct 538491 CCATTCTACTTAATGATAAGTACAGTCTGGACGGACGAGACCCCAATGGTTATGTGGGGT 538550 Query 38020 GTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGA--GATTCCCATTTACGG 38077 | ||||||| || | || | || || | | ||| || ||| | || | || Sbjct 538551 GCATGTGGTCCATCGGGGGAATCCATGACATGGGATGGAAGGAACGAT--CTATCTTTGG 538608 Query 38078 CAAGATTCGGTACATGAACTA 38098 ||||| || ||||||||||| Sbjct 538609 AAAGATACGCTACATGAACTA 538629 >seq5076 Length=596799 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 33892 CAATCGAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTG 33951 |||| || ||| || | ||| || ||||||||||| || || ||||||||| |||||| Sbjct 35324 CAAT-GATACCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTG 35266 Query 33952 TAATCTGCCAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || | || || || | || |||| |||||||||||||| ||||| |||||||| Sbjct 35265 TAGTCCGA-AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTG 35207 Query 34011 ATC 34013 ||| Sbjct 35206 ATC 35204 >seq5008 Length=644625 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| ||||| ||| | ||| ||||||||| |||||||| || | | Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || ||||| ||||||||||| || Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 342868 ATGCCCTCCTTGTCC 342854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035784411000