Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_009904.1 Length=142072 Score E Sequences producing significant alignments: (Bits) Value seq1017 351 9e-92 seq1345 104 2e-17 seq1112 100 3e-16 >seq1017 Length=11781 Score = 351 bits (388), Expect = 9e-92 Identities = 1995/3159 (63%), Gaps = 100/3159 (3%) Strand=Plus/Minus Query 130766 ATAGTCCGCATCGGTTACTGGTTCTACTTTACCTAATAAGTACCCATTACCTACCTGAGA 130825 |||||| | ||| | | | |||||| || |||| ||| || ||||| || || || Sbjct 9835 ATAGTCGGAATCACTCATAGCTTCTACGTTTCCTAGACGGTAACCGTTACCCACTTGTGA 9776 Query 130826 GAAGAAGTCATGGTTACTAGTTGTTGTAGAGATACCATTCATTACAATAGGGTTTACGTC 130885 |||||||||||||||| |||| || || || || ||||| ||||| || || || || Sbjct 9775 GAAGAAGTCATGGTTAACCGTTGCCGTTGAAATTCCGTTCATAACAATTGGATTAACATC 9716 Query 130886 TGCACTTGTTGTTGGGAATAAAGGGTTCATC-CCTAAGTTAGCTAGAGCTTTATTTAAAT 130944 | | || ||| ||| | | || || | |||| || || ||||| || || Sbjct 9715 TTC-CTCAGTGTCGGGGAACATTGGATCCTGTCCTAGATTCATTAATGCTTTGTTGGCAT 9657 Query 130945 TGTACTCCAAAAATGTATTAACATCTTTTGTCCAACCAATCTCACTATATAGTTCAGCAG 131004 |||| | || || ||| || | ||||| || | | | || || | || Sbjct 9656 TGTAACGAATGAAGGTTAAAACGTCGTCAGTCCACCCTACTTGATCGTAAAGCAGATGAG 9597 Query 131005 TATACTGTGTTTCGTTCTCCCATAATTTAAATGCTA--AATCGAT-TAC--CCATTGTTC 131059 |||||| | |||||| | |||| | || || || | | ||| ||| | || Sbjct 9596 TATACTTTTCTTCGTTTTG--ATAA---AGATCGTACAAAAAGTTATACATCCAATCTTT 9542 Query 131060 CATTTCTTTTTGTTCAGTTTCTGGTAACTGGTTAAACCCTAACTGGTATTTATAGCCGAT 131119 | || |||||||| ||||| ||| || || ||| | ||| ||||||| || || Sbjct 9541 TAAGTCGTTTTGTTCGTTTTCTCCTAATTGATTGAACTGAACTTGGAATTTATAACCAAT 9482 Query 131120 ATAGGTTCCATGTACAGACTCGTCACGAATAATTAATTTAATAATTTCGGCTGTATTAAC 131179 || |||||||| || || |||||||||||||| || || || || || || || Sbjct 9481 GTAAGTTCCATGAACGGATTCGTCACGAATAATCAACTTGATGATCTCAGCAACGTTTGG 9422 Query 131180 CATTTTTGCCTCACCTAAATAGCGTAGTGGTGTGTAAAAACCTGAGTAAAATAGGAAGCT 131239 | || | ||| | ||| | | || || || || || || || || || || | Sbjct 9421 AAGTTCGTTATGACCAAGATACCAAATAGGGGTATAGAATCCAGAATAGAAAAGAAATGT 9362 Query 131240 CTCCAACAGTACGGATGCACTCTTTTTCTGTAGTGG-TGTACCGTTTCTATAAATATCGT 131298 || | | || || | | || || | ||||| ||| | || ||| || Sbjct 9361 TTCAAGAAAGACACTTGAAATTTTCTTTTTAAGTGGATGTCCATCATCGTGGTATA--GT 9304 Query 131299 TAATAA----TATTAGCTTTATATTGTAAACGTTTATTTGTAGCTACCCATTCAAAGATA 131354 |||| | || | ||| | ||| | | || | ||| | ||| | |||||| Sbjct 9303 GAATAGATTTTTTTGGTTTTGTTTTGAAGAAATTCTTCTGTGTCACTCCAATGAAAGATC 9244 Query 131355 TTGTCAATCTCTGTAGGTGTATTAAATGTGCTAAAAATTGTTGAATAACTTTTAGCGTGT 131414 | ||||| || ||| || || || || ||| |||| || ||||| ||||| ||| Sbjct 9243 TCATCAATTTCATCAGGGGTGTTCAAAGTCGAAAAGATTGAAGAGTAACTCTTAGCATGT 9184 Query 131415 ACTGCTTCCATAAAGGCTATGTTATTTAAAACAGCTTCTTCATGTTGTGTTCTTACATCA 131474 |||| ||||||||| |||||||||||||| || ||||||||| ||| |||| Sbjct 9183 ACTGATTCCATAAACTGAATGTTATTTAAAACCGCAATTTCATGTTGCGTTACCGCATCT 9124 Query 131475 TCAAGTAGTGAGTGTACCCCCGATTCTGATTGAACTGTGTCTAATAATGTTAACCCACCA 131534 | | || | | || || || |||| || || | ||| |||||||| ||| Sbjct 9123 TTTCGAAGGGCTGCCATTCCGTCTTGAGACTGAAGGGTATCCAGTAAAGTTAACCCCCCA 9064 Query 131535 AACACTTTATTTATTAAATC--TTGCTCCATATCAGATAGCTTTGCCCAATCATTAACAT 131592 || || | | | |||| || | |||| || ||| || || | || Sbjct 9063 AAGACGTGACCAAC--AATCCATTTGTGATCATCATCAAGTGAACGCCAGTCCTTTAGAT 9006 Query 131593 CGTTACCCACAGGGACACGTGTGTCCAACCAAAATTGCTCAGTAAGCTTTTTCCATGTGG 131652 |||| | || | | || || | ||| || ||||| || | |||| ||| || | Sbjct 9005 CGTTTGATAGTGGAATTCTAGTATCAAGCCAGAACTGCTCGGTTAATTTTTCCCAGGTAG 8946 Query 131653 CTTGGTCAATTACATCATCAATCTTATTCCAGTTAATTCCTTCATA-----CTTTT--CT 131705 ||| ||||||| |||||||||| |||||||||||| ||| || ||||| || Sbjct 8945 CTTTGTCAATTTCATCATCAATAGAATTCCAGTTAATCGCTTTGTAGTTTCCTTTTGACT 8886 Query 131706 TGC-----AA------ATTCATGTGCTCAT-----CTCCT------TAAATTGTACAACT 131743 | | || ||| |||| | | ||||| |||||| || || Sbjct 8885 TTCCGGTTAAGACTTTATTAATGTCCATGTATTTCCTCCTAAGGATTAAATTACGCAGCT 8826 Query 131744 TTCACACTCTGAAACCCCTACTTCGCTTCCGTCTTCTTCGGTGAATGTTCTAACATAATA 131803 |||||| || | || ||||| | | || || || || |||| || ||||| Sbjct 8825 TTCACATTCATTGGCACCAACTTCAGTA---TTATCGTCAGTAAAGGTTCGCACGTAATA 8769 Query 131804 AATTGTTTTTATACCTTTTTTCCATGCATAATGTCTTAATAAAGTTAAGTCCCGAGTGGA 131863 | || ||| || |||||||| | ||||||| || | | ||||| || | || || Sbjct 8768 GAGTGATTTAATGCCTTTTTTGTAAGCATAATTTCGAAGGATCGTTAAATCTCTGGTTGA 8709 Query 131864 TGTAGCGCCACC-CT-CCACCTT-CCAAGGATAAAGATTTTCTGGTAACTCTGAGCGCAT 131920 | | ||| || ||| ||| ||| ||||||| | ||| | ||| ||||| Sbjct 8708 CATTTTGTCACTTCTACCATCTTTCCATTCATAAAGACCCTTTGGAATGGTTGAACGCAT 8649 Query 131921 AAACAATGTTAAACTCATGCCTTGGTCAATATGTTTTTGTGCCGTTGCGTACACGTTAAT 131980 ||| | ||||||||||| ||||| |||| || ||||| || | ||||| || | ||| Sbjct 8648 AAAGAGGGTTAAACTCATTCCTTGATCAACGTGCTTTTGAGCGGCAGCGTAAACATCAAT 8589 Query 131981 TACGTCAATCATACTGGTATCATACGCTGACTTGTAATATGGAATTGTCTTCTCAGATAA 132040 ||| | | ||| || ||||| ||||| | || || ||||| || | | || | Sbjct 8588 TACTTTACGCATGTCAGTGTCATAGGCTGATTCATAGTAAGGAATGGTGTCATTTGAAAG 8529 Query 132041 ACGAGGCGCAGGGTAATAAGTTTTACCTGTTTTACCATCTTGACGTTCTTCAATCATAGA 132100 || || ||||| ||| | | || | || ||||| ||| ||||||| | Sbjct 8528 GTATGGAGCCGGGTAGTAAATGGTTCCAATCTTTGATTCTTGGCGTGCTTCAATTTTTTG 8469 Query 132101 GATAATTGGGTGCAGTGAAGAGGTAGTCTCATTAACATAGGCAATACTACCATTCGGAGC 132160 | ||| || |||| | || | || || || ||| | |||||| ||||| Sbjct 8468 AACAATCGGATGCAAACTTGCTGTTGCATCCCCAATGTAAGCAGTTGAACCATTAGGAGC 8409 Query 132161 CACGGCTAAACGGTTTTGGTGGTATAGACCACTTTCAATAA-TGCTGTTTCTTAATGTTT 132219 ||||| | || || || ||||| |||||| || || | || | || |||| | | Sbjct 8408 TACGGCCATGCGATTCTGATGGTAGAGACCATACTCCATGACTGATTGTT-TTAAAGCGT 8350 Query 132220 CCCAATCTTTTACATTAGGTAGTACCACTCCATCAAATACTTCTGCCACCTTACTAGAGA 132279 ||| |||||| | | || | | || |||||||| | | | || ||| || Sbjct 8349 TCCAGTCTTTTTCGGTTGGAATAAAGACGCCATCAAACAGTGATTTTACTTTATCTGAC- 8291 Query 132280 TTTCCTGACTTAGTGTTGGTACA-TATTCATCAAAGTAAGAGCCGTCTGCATACTTAGAG 132338 ||| | | | | |||||| || | ||| || ||||| || || ||||| ||| Sbjct 8290 TTTGGAGCCCAACTCTTGGTAGTGTACTGATCGAAATAAGATCCATCAGCATATTTACTT 8231 Query 132339 TTCTCAAAGTTGTAGAATGTTGTGTCACGCTCTTTAGCAATCTTATTGCTTGCTACCAAA 132398 || || || || | ||| | | | || || ||||| || | ||| || || Sbjct 8230 TTTTCGAAATTATGGAAAACTTTTCCGCGATCCTTAGCCATTTGATTAGAAGCCTTCAGG 8171 Query 132399 GTAGCATAATTAATTAATTCAAACAG--GGCATCTGTCATTTCAATAGATTCAGGTGAGC 132456 || || || | || || | || || | || | |||||| || |||||||||| Sbjct 8170 GTCCAGTAGTTTA--AAAGCATAAAGTAGGTACTGGTAAATTCAATGGACTCAGGTGAGC 8113 Query 132457 CGTATTCTACTTGGTTACTTGCGAACCACGCATGTAGCCCCATTGCCCCTAAACCGATTG 132516 | || | | || || | || || | | ||| || ||||| || || ||||| |||| Sbjct 8112 CATAGTACATATGATTTTTAGCAAAATATGAATGAAGACCCATGGCTCCCAAACCAATTG 8053 Query 132517 TATGAGCTTTATCGTTACCATTCTTGATAGTAGGCACTGCTTTTATATTTGACACGTCTG 132576 ||| | || || || | || | | || || | || || ||| || | Sbjct 8052 AGTGACTTAGTTCATTTCCGTGTTTAACTGATGGAACCACGTTAATTGATGAGTGATCGG 7993 Query 132577 TAATATATGTTAGAGCTCTTACCATCGTCTCAATTGATGCCACTACATCATTAGATGTTT 132636 ||| | ||||||||| | ||||| | |||| |||| | | || |||| Sbjct 7992 TAACGAAGGTTAGAGCTTTCACCATGGCTTCAACTGATTTACCGAAGTCTGGTGATG--- 7936 Query 132637 CTAACAAGTTAAGGATGTTAATTGAACCTAAATTACAGCTAATGTCTGCACCTAACTCTT 132696 | | | ||| | | |||| | || || | |||||| | || | ||||||| || Sbjct 7935 CCATGAGGTTCACTACGTTAGTAGAGCCCAGATTACATGAGACATCGGTTCCTAACTGTT 7876 Query 132697 CGTATACTTGTTCATCATTTAGCTTAGATGGTGTCTGCACTTGAAGGATTTCTGAACATA 132756 |||| ||||||||| | | | || |||||||| || || || ||||| | ||| | Sbjct 7875 CGTAGTTTTGTTCATCGTCAACGATGGAAGGTGTCTGAACCTGGAGAATTTCGGTACACA 7816 Query 132757 GATTGCTCATAATGATTTTGCCATCAATAGGATTGGCTTTATTTACAGTACTAACATTCA 132816 |||| ||||| | || ||||| |||| ||||| | || || || || || | Sbjct 7815 GATTACTCATGACAATCTTGCCGTCAACCGGATTATCACGGTTAACGGTGTCAATGTTGA 7756 Query 132817 TAATATATGGGTAACCTGACTCTTGTTGTAAACGGCTAATTTCTTCTTCCAAATCTCGTG 132876 |||| ||||| || || || |||||||||| | ||||| ||| | || || | Sbjct 7755 TAATGTATGGATAGCCAGATTCTTGTTGTAGTTTTCCGATTTCGGTTTCAAGTTCACGAG 7696 Query 132877 C---ATTCATTACCTTACTTCTGATATTTGGGTTCTGAATCATGTTATTGTATTCTGAAT 132933 | | || || |||| || | || ||||| | ||| || | ||||||| | Sbjct 7695 CTCGAATCTTTTTCTTAGAAATGTTCTT---GTTCTTGACCATATTGTCGTATTCTTTAG 7639 Query 132934 CAATGTCTACAAATGAGAACGGTACACCGTATTCTTTAGCAACATCATATGGAGAAAATA 132993 ||| || ||| ||||||| || || || || || |||||||||||||| |||| Sbjct 7638 AAATATCAACATATGAGAAGGGAACTCCATACTCACGTTCAACATCATATGGACTGAATA 7579 Query 132994 AGTGAATTACATCCCCAGACTCAGCTAGCTCATAAAATTTATCGGGAACAACTACTCCCA 133053 || || |||| || | ||| ||||||||||||||||| || ||||| || || | Sbjct 7578 GGTACATATCATCATCATTTTTAGCGAGCTCATAAAATTTATCTGGCACAACCACACCAA 7519 Query 133054 AAGAAAGTGTTTTGATTTG---CTTTGCGGATTCTGCATTTTCTTTTCTAGTTGATAAAA 133110 ||||| || || | | | ||| || || || ||||| ||| || | || | Sbjct 7518 GTGAAAGGGTGTTTACTCGGATTTTTTCG---TCGGCGTTTTCCTTTTTAACTCCCAAGA 7462 Query 133111 AGTCCATAATATCCGCATGGAAAACATTTAGATAGACTGCGCCTGCACCTTGTCTTTGCC 133170 | | || || || | |||||||||| | ||||| || | || ||||| | |||||| | Sbjct 7461 ATTGAATGATGTCAGGATGGAAAACACTAAGATAAACAACCCCAGCACCGTTTCTTTGGC 7402 Query 133171 CTAATTGATTTGCGTACCGGAAACCATCTTCTAGCATTTTCATAACAGGGACGACACCAC 133230 ||| ||| || | || ||||| ||||||||| | ||||| || || | ||||||| Sbjct 7401 CTAGTTGGTTGGAATAGGTGAAACTATCTTCTAGTAACTTCATTACTGGAAGAACACCAC 7342 Query 133231 TACCTGCCCCCTCAATTCCCTTAATAGGGTCACCAAGAGCTCTTAAGTTTGAAAGATTTA 133290 | |||| || | ||| ||||| || |||||| |||||||| ||| |||||||| | Sbjct 7341 TGGCTGCTCCTTGAATGTGTTTAATGGGATCACCAGCAGCTCTTAGGTTAGAAAGATTAA 7282 Query 133291 TGCCGACTCCTCCGCCAAGTTTAGATAGTTGAAGTGCACTGTTCAACGTTCTACCAATTG 133350 | || |||||||| |||| ||| |||| |||||| || || | |||||||| || | Sbjct 7281 TTCCAACTCCTCCACCAATTTTGGATAATTGAAGAGCTGAATTAATGGTTCTACCGATCG 7222 Query 133351 AAGACATTGAATCTTCTACTTGAATTAGAAAACAGCTGACAT--ACTCCCCTCTTCTAAG 133408 | ||| ||| |||| || ||||| ||| || |||| || | | Sbjct 7221 TATTCATGTTATCGGTGGTCTGAAGTAAGAAACA--TGAAATCAACTCACCCCGACGTTT 7164 Query 133409 TCTACCTGCATTTAAAAAAGTAGGGGTTGCAGGTTGGTATCTACGGTTAATTAGCTCATC 133468 | || || || |||||||||||||| |||||||| | | | | ||||| ||||| Sbjct 7163 CTTTCCAGCGTTCAAAAAAGTAGGGGTGGCAGGTTGAAAACGCTGATGAATTAATTCATC 7104 Query 133469 TGCAATCTTCATAGCAAGCTCTTCGTCACCATCACCCATTGTGAGTGCATTAAACGCTAC 133528 || | |||||||| | | || |||||||| | | | | ||| || | ||| Sbjct 7103 AGCTAGATTCATAGCTAATTTTTGGTCACCATTAGCTAGAAACAATGCGTTCATTGCTGT 7044 Query 133529 TCTATCTTCATAACGCTCTAGGTA----TCGTTCCCCATCATCTGTTTTCATTGCGTATT 133584 | |||| || | |||| ||| ||| || || |||||||||||||||| Sbjct 7043 CCGATCTATGTAGCCTTCTAAGTACATGGAGTT----GTCGTCAGTTTTCATTGCGTATT 6988 Query 133585 GTTTATAGAAACGGTAAGCCCCCATAAATGTGTCGAATCTGAACTTTTTACTATAGATGA 133644 | |||||| |||||| |||| |||| | ||| || |||| ||||| | Sbjct 6987 GAGCATAGAACTTGTAAGCAGCCATGAATGATTTGAAGTGAAAATTTTGACTATCCAAAT 6928 Query 133645 ACTTAAATAAtttttttATAAATTCCATTGAGTACTT-GTCAGTAATTACTGTCTTATCA 133703 |||| |||| || | || ||| | || |||||| | | || || ||| ||| Sbjct 6927 ACTTGTATAACTTCTCAATGAATGAAAATGGGTACTTATTGACGAA--ACCCTCT--TCA 6872 Query 133704 ATGTA-TCCTTCTCGAATTAGATAACTAATTTTCTCCTCTAAAGAGTAGAAAAATACTGT 133762 ||||| | | || |||||| ||| ||| || | ||| || | || || || Sbjct 6871 ATGTAGTTATGCT-TAATTAGGTAATTAAAACGATCTTTTAACGAATCAAACTTAACGGT 6813 Query 133763 GTTCTTGTTTACATGTTCTAAAAAGAATGCTCTAACAGCTTCTTTATCTTTGTCTAACTG 133822 ||| || || | |||| |||||| || | | ||||| | |||||| || | || Sbjct 6812 ATTCGGATTAACGTTTTCTTTAAAGAAAGCCTTCAGTGCTTCCTGATCTTTTTCCAGTTG 6753 Query 133823 AATCTTTCCGTTATTAGGGATATTCAATTGGTTATTAAG 133861 |||| || | ||||||||| | || ||||| || Sbjct 6752 AATCCGGCCATCGACAGGGATATTAATTTCATTATTTAG 6714 >seq1345 Length=12888 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 6872 CAGCAAAAGAGTGGATTGCACAACGTGAATCTAGTGGTTCTTATGATGCAACAAATGGTC 6931 |||| |||| ||||| | ||||||||| |||| || || ||| |||||||| Sbjct 8229 CAGCCAAAGCTTGGATCACTTCACGTGAATCAGGTGGCTCATACACTGCTTCAAATGGTA 8170 Query 6932 AGTATATTGGTCGTTACCAATTATCTGCCTCTTATTTAAATGGTGACTATTCACCTGCCA 6991 | || ||| |||||||||||| || || ||||||||||||||||||| || | Sbjct 8169 ACTACTACGGTAAGTACCAATTATCTAAGTCATACTTAAATGGTGACTATTCACAAGCTA 8110 Query 6992 ACCAAGAACGAGTAGCTGATGAGTATGTAGCAGGTCGCTATGGCTCATGGGAGAACGCAA 7051 ||||||| |||| ||| | | || ||| | || ||||| |||||| ||| Sbjct 8109 ACCAAGATAGAGTTGCTAACCAATACGTAACTTCACGTTATGGTTCATGGAGTGGTGCAC 8050 Query 7052 AATCTTTCTGGTTAGCAAATGGTTGGTACTAAAAT 7086 |||| |||||| | || | |||||||||||| || Sbjct 8049 AATCATTCTGGCAATCACACGGTTGGTACTAAGAT 8015 >seq1112 Length=42414 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 6886 ATTGCACAACGTGAATCTAGTGGTTCTTATGATGCAACAAATGGTCAGTATATTGGTCGT 6945 || |||||| |||||| || || || ||| | |||||||||||| |||||| Sbjct 24971 ATCGCACAAGTGGAATCTGGTAACTCATACAGTGCCAGAAATGGTCAGTACATTGGTAAA 24912 Query 6946 TACCAATTATCTGCCTCTTATTTAAATGGTGACTATTCACCTGCCAACCAAGAACGAGTA 7005 |||||||||||| | || || |||||||||||||| || || || ||||||||||| ||| Sbjct 24911 TACCAATTATCTTCATCATACTTAAATGGTGACTACTCTCCAGCTAACCAAGAACGGGTA 24852 Query 7006 GCT 7008 ||| Sbjct 24851 GCT 24849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 454471152960000