Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5218 159 4e-34 seq5403 140 4e-28 seq5413 104 3e-17 seq947 93.3 5e-14 >seq5218 Length=3038582 Score = 159 bits (176), Expect = 4e-34 Identities = 608/939 (65%), Gaps = 23/939 (2%) Strand=Plus/Minus Query 113915 AACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCA 113974 ||||| || | ||| |||||| ||| ||||| || || || ||||| ||| | || Sbjct 2802533 AACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCG 2802474 Query 113975 TTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTA 114034 || ||||||| ||||| || || || ||||||||||| || |||| | |||| ||| Sbjct 2802473 TTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTT 2802414 Query 114035 CGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 114094 | | || | || | ||| ||||| || | | |||||| | || | |||| Sbjct 2802413 CTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAA---AGATCTGTC 2802357 Query 114095 TCCCCCTG---CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAAT 114151 | | |||||| || |||| || || || | | | || ||| ||| | Sbjct 2802356 GGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAA 2802297 Query 114152 GTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 114211 || || || | ||| || | |||| |||| | || || || |||||| | || Sbjct 2802296 GTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAA 2802237 Query 114212 ATTGTCTCAAAAATGCGA-GCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 114270 || || ||||| || | | || | | || |||||| ||| || | | || Sbjct 2802236 ATGGTTTCAAAGATCTGTTGGTTTAAGAGGCT-GGCCTCCTCGCTTTCGTAGG-GATAAC 2802179 Query 114271 GCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 114329 ||| || ||| | | || || ||||| || || |||| |||||| || ||||| || | Sbjct 2802178 GCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTA 2802119 Query 114330 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 114389 ||| ||||| || | || || ||||| || |||| || | | |||| || | Sbjct 2802118 AATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGT 2802059 Query 114390 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 114449 || ||| || |||||||| || | |||||||| | | ||| | | ||||| Sbjct 2802058 TTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTT---TCTCTG 2802002 Query 114450 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 114509 | ||| || | || ||||| || |||| ||| || || | |||| || Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 114510 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 114569 || |||||| | ||||||||| |||| ||| | ||||||||||||| ||||| || Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 114570 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 114629 | || |||| ||| ||||| |||||| | |||||||| || | || |||||| || Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 114630 GGGACTTGAGAATAGCCTTCCAGACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCC 114687 | |||| | || || || ||| | | ||| ||||| ||| || || || Sbjct 2801821 GCGACTCAATGATGGCGAACC--ACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTCC 2801764 Query 114688 CTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCC 114746 ||||| ||||| || || || ||||||||| || ||| | || ||| || | Sbjct 2801763 CTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGA-AGTC 2801705 Query 114747 CTGGTGCCTTATCTGGG--CAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCAT 114804 | || || || | |||| ||||| || ||||| | || |||| || || ||||| Sbjct 2801704 CAGG-GCATT-TGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCAT 2801647 Query 114805 GAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 |||||| ||||| ||||| || || |||| | ||| || Sbjct 2801646 GAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACG 2801608 >seq5403 Length=2915140 Score = 140 bits (154), Expect = 4e-28 Identities = 332/496 (67%), Gaps = 8/496 (2%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| ||| || |||||||| ||||||||||||| ||| ||||||| Sbjct 122336 GTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCAT 122277 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 125877 |||| || || ||||| | ||| | ||| | || || | || | || || || Sbjct 122276 GAAATTGAAAGGATTCTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGCCG 122217 Query 125878 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 125937 |||| ||| | || ||||| | |||||| || ||||||| ||||| | || || Sbjct 122216 GTCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATT-CA 122158 Query 125938 TGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||| | ||||| || |||| ||| ||||| ||||| || || || | ||| || Sbjct 122157 CGGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCG- 122099 Query 125997 GAATGGTGTCCACCCCAGGT--CTATTGCGC-AAAGTCTTGAAGAGTTCCACGGCAAACT 126053 ||| || | ||| | || || || | | | || ||| | | ||| ||||| | Sbjct 122098 --ATGATGCGCTCCCGACGTGGCTTCTGGACGAGATGCTGGAACATTAGCACAGCAAAGT 122041 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | ||| || || ||||| | |||||| || || || |||||| ||| || ||||| | Sbjct 122040 CGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCA 121981 Query 126114 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCA 126173 |||| |||||||||| |||||| || | || ||| ||||||||||||||| | Sbjct 121980 GACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTA 121921 Query 126174 CACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCA 126233 | || || || | || ||||| ||||| | ||||||| | | ||| || Sbjct 121920 CGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATCCAGGCCA 121861 Query 126234 TCGCCCACTGCGCCTT 126249 |||||| | ||||| Sbjct 121860 GCGCCCAATCGGCCTT 121845 >seq5413 Length=1192065 Score = 104 bits (114), Expect = 3e-17 Identities = 169/241 (70%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||| ||||| ||| | | || || || || ||||| | || ||||| ||||| || || Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||| || |||| |||| | ||||| || || || || ||| || || ||||| || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 |||| |||||||||||| | || || || | | | |||||| || ||||||| || Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 ||| ||| | | |||||| | |||||||||| | ||| ||||| ||||| | Sbjct 479916 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 479857 Query 172146 C 172146 | Sbjct 479856 C 479856 >seq947 Length=14288 Score = 93.3 bits (102), Expect = 5e-14 Identities = 250/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 8085 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 8144 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 8145 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 8204 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 10961 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 8205 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 8263 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 11018 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 8264 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 8320 Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078 | || || || || || | ||||| ||||| || |||||||||||||| | || Sbjct 8321 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 8380 Query 11079 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 8381 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 8439 Query 11138 TTCCCCGTCCCAGG 11151 || || || || || Sbjct 8440 TTACCAGTGCCCGG 8453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597312531940000