Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5076 123 2e-23 seq5218 107 2e-18 seq5008 104 2e-17 seq5215 100 3e-16 >seq5076 Length=596799 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||||| ||||| | ||||| || || || |||||||| || | Sbjct 35317 ACCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 35258 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||||||||||||| | || || |||||||| ||||| || Sbjct 35257 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGG 35198 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || |||||||| || || || || ||| ||| ||| | || || | || || Sbjct 35197 GATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAAC 35138 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| ||||| |||||||| Sbjct 35137 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5218 Length=3038582 Score = 107 bits (118), Expect = 2e-18 Identities = 150/206 (73%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || |||||||| || || | || ||| || | ||||| ||||||||||| Sbjct 2718301 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCA 2718360 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || ||||||||||||||||| || || | | || ||||| Sbjct 2718361 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG-AATCTTGGCTTT 2718419 Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 ||| || | |||| ||| || || || || | ||| | ||||||||| || | Sbjct 2718420 GACATTTTCGATGGTAT--CCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGG 2718477 Query 64424 GTTTTTACGAAAATTTGCATTTTAAT 64449 || || ||||| || ||||| || || Sbjct 2718478 GTCTTAACGAAGATCTGCATCTTGAT 2718503 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| |||||||| ||||| || || | | ||| | |||||||| | |||| Sbjct 2801975 GATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCAC 2801916 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | |||||||||| ||||||||||| ||| | || || || |||||| ||||| Sbjct 2801915 AGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCC 2801856 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAAT 154753 ||| | | ||||| || |||| || |||||||| | ||||| || Sbjct 2801855 TTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGAT 2801809 >seq5008 Length=644625 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| |||| || |||||||||||| Sbjct 342730 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCG 342671 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || || || || || || || || || || ||| Sbjct 342670 GCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTG 342611 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| || || || || | || | ||||||||| |||| || Sbjct 342610 ACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 342551 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||||||||||||||| Sbjct 342550 TTCACGAAAATTTGCATTTT 342531 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | | ||| | ||| | || || || || || |||||||| || | Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||||||||| | || || |||||||| || || || Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | ||||| || || || Sbjct 342868 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342809 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| |||| || || ||||| || ||||| Sbjct 342808 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 >seq5215 Length=2160492 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || || |||||||| || | || |||||| | || || |||||| Sbjct 1797533 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGC 1797592 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | || | ||||||||||| || || || || || || ||||| | | || Sbjct 1797593 TTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGA-TCTT 1797651 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || ||| | ||||| || ||||| || | || | ||| || || || Sbjct 1797652 GGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTTCCAGT 1797711 Query 64420 CAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| ||||| || || || |||||||| Sbjct 1797712 CAAGGTTTTCACAAAGATCTGCATTTT 1797738 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| | |||| || || || ||||| ||||||||||| | | Sbjct 1797053 CCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAG 1797112 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| ||||| | || | ||||||||||| || || Sbjct 1797113 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797172 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || || Sbjct 1797173 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797232 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || ||||| || || ||||| || ||||| Sbjct 1797233 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || |||||| | || || |||||||| ||| Sbjct 1797311 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 1797370 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || || || || || || || || || || ||| Sbjct 1797371 GCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 1797430 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || | ||| | |||||| || ||||| || Sbjct 1797431 ACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTC 1797490 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 1797491 TTCACGAAGATCTGCATT 1797508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499610449420000