Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq832 147 1e-30 >seq832 Length=33730 Score = 147 bits (162), Expect = 1e-30 Identities = 435/663 (66%), Gaps = 11/663 (2%) Strand=Plus/Minus Query 65943 GCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCT 66002 || || || || || |||| || | ||||| || ||||| || ||||| || || Sbjct 19765 GCGCTGGGTATTGGTGGGTTGCCCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGC 19706 Query 66003 TCAGGGAAGTCAACGTTGTGC-CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 66061 || || || | ||| | ||| || || || | || | || || ||| ||||||| Sbjct 19705 TCTGGTAAAACCACGCT-TGCGCTGCATGCTATTGCAGAAGCACAAAAGCGTGGTGGCAC 19647 Query 66062 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 66121 || | || || ||||| ||| | | ||||| | || ||| ||| || || Sbjct 19646 TTGTGCTTTTATTGATGCCGAGCATGCGTTGGACCCCGGTTATGCCAAAAAGCTGGGCGT 19587 Query 66122 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 66181 |||||| || || || || | |||||||| | || || ||||| |||| || | Sbjct 19586 GGATGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGC 19527 Query 66182 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 66241 || ||||| || |||| || | | | || || || ||| || || || Sbjct 19526 AGATACACTCGTGCGATCCGGCGCTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACT 19467 Query 66242 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 66301 ||||||||| || || || ||||| ||||| || || || || ||||| ||||| || Sbjct 19466 GGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCATGTTGGCCTTCATGCGCG 19407 Query 66302 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 66361 ||||| ||||| |||| ||||| || || ||| | || || |||| || || | Sbjct 19406 TTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGAT 19347 Query 66362 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAATGAG 66419 | | |||| ||| | ||| ||| || || | || | || ||| || Sbjct 19346 GATTTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAAT--CCG---GAA 19292 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGG 66479 || ||||| |||||||| || ||| ||||| | || |||||||||||| | ||| | Sbjct 19291 ACAACCACGGGTGGTAATGCCCTGAAGTTCTATTCTTCCGTGCGTATGGATATTCGCCGC 19232 Query 66480 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC-GGCAACCGCACGCGCGTGAAGGTTGT 66538 |||| || ||||| ||||||| || | || || | |||||||| |||||||| Sbjct 19231 ATCGGGTCCATCAAGGACAAGGATGAGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGT 19173 Query 66539 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 66598 || |||||| ||||||| || ||| |||| || ||| ||| | |||||||| || Sbjct 19172 TAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGG 19113 Query 66599 CAT 66601 ||| Sbjct 19112 CAT 19110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242454146906000