Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5218 170 2e-37 >seq5218 Length=3038582 Score = 170 bits (188), Expect = 2e-37 Identities = 741/1157 (64%), Gaps = 34/1157 (3%) Strand=Plus/Plus Query 93717 TTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAG 93776 |||| | ||||||| ||||| ||||||||| ||||||||||| || || |||| | Sbjct 2801058 TTACAACTACTTTGGATTCAAGACTCTGGAGCGTTCGTACCTCCTTAAAATCAATGGTAA 2801117 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 | |||||||||| || || |||| |||||||| || ||||| || || || | || Sbjct 2801118 AATCGCCGAGCGACCCCAGCACATGCTTATGCGCGTGGCAATCGGAATCCATGGAGAAGA 2801177 Query 93837 CATGCCGAA--TGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATG--- 93891 ||| ||| || || | | | || || ||| || | ||| || | Sbjct 2801178 CAT--CGATGCTGCCGTGGAGACGTACA---ACTTGCTTTCGGAGCGTTATTTCACGCAC 2801232 Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 || | || || || || ||| | || || ||| | || || ||||| || Sbjct 2801233 GCTTCGCCAACGCTATTTGCCGCTGCCACAAATCGTCCCCAGCTATCGTCTTGTTTTCTC 2801292 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGA--CAGCCTCAAGGACTGTGCGA 94009 |||| | | ||||||| || || || ||| | ||| | || | || || | Sbjct 2801293 CTGACCATGACTTCCGACTCGATTGAGGGTATCTTCAAGTCAG--TTGAGCAATGCGCCA 2801350 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 ||||| || | || || || || || | | |||||| | ||||| | |||| Sbjct 2801351 TGATCTCCAAGTCTGCAGGTGGTATTGGTCTTAATGTCCATTGTATTCGTGCAAAGGGTA 2801410 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | | ||| |||| ||||| ||||| ||||| || || || |||||||| | ||||| | Sbjct 2801411 CTTCCATTTGCGGAACCAACGGCACTTCCAATGGTCTGGTTCCTATGCTGAGAGTCTTTA 2801470 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 |||||| ||| || || ||||| ||||||||||| | | || ||| | || || | | Sbjct 2801471 ACAACGTGGCACGATATGTGGATCAGGGTGGTGGCAAGCGGCCGGGAGCCTTTGCCATTT 2801530 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||| ||||||||||| |||| || | || | ||||| ||||| |||| Sbjct 2801531 ATCTAGAGCCCTGGCATTCGGATGTTTTTGAGTTTCTGGACCTTAAGAAGAATACTGGCA 2801590 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | | | ||| | || | ||||| || || ||| | ||||| || || |||| Sbjct 2801591 AGGAAGAGCATCGAGCCCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGA 2801650 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 |||| || ||| || | |||| ||||| |||||| | |||| || ||||| Sbjct 2801651 AACGAGTGGAGGCCAATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTC 2801710 Query 94370 CCGACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 || || || | ||| | | |||||| | | |||| |||||| | |||| Sbjct 2801711 ATGATGTGTGGGGCGAT-GAG-TTTGAAAAGCTATATGTGAAATACGAACAGGAGGGACG 2801768 Query 94428 GGCCA--GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 || | ||| | | | || | ||||| ||| | || || ||| Sbjct 2801769 CGCAAACCGAA--CTGTAAAAGCACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTG 2801826 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| || | || ||||| | ||||||||| | |||| ||| |||||| ||| Sbjct 2801827 GAGACTGGCAATCCTTACATGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAACCAACAG 2801886 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 || | || || || || ||||||||||| || ||||||||||| |||| || Sbjct 2801887 AACGTGGGCACCATTAAATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCC 2801946 Query 94606 GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCC 94665 ||||||||||| || || || ||| || ||| || || || | || | || ||| Sbjct 2801947 GACGAGATTGCAGTTTGCAATTTGGCATCGATC--GCTCTCAACAT--GTTTGTGACGCC 2802002 Query 94666 TACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTC 94725 | | | | | | || | | ||||| | | || | | | ||| | Sbjct 2802003 -AGA-GAAAA------CATATGACTTCAAAAAGCTTAAGGAGGTCACAAAGACGGTGGCC 2802054 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||||| || | | |||| || | ||||| ||||| | |||||||| |||| || Sbjct 2802055 AGAAACCTCAATAAGATAATAGATATAAACTTTTACCCACTGCCGGAGGCCAAGAAGTCC 2802114 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 || | | |||||| || || ||||||||||| |||||| | || ||||||||| | | Sbjct 2802115 AATTTAAGGCATCGTCCTATTGGCATCGGCGTTCAGGGTCTGGCTGACGCGCTGATTCTT 2802174 Query 94846 ATGCGTCTGCCCTACGA 94862 |||||| |||||||| Sbjct 2802175 ATGCGTTATCCCTACGA 2802191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494689187780000