Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5358 123 2e-23 seq5059 98.7 8e-16 >seq5358 Length=3330258 Score = 123 bits (136), Expect = 2e-23 Identities = 176/248 (71%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 108342 CGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCAC 108401 ||| || ||| | ||||| || |||||||| ||||| | ||||| ||||||||||||| Sbjct 2666349 CGGTTTGGGTATCACGGCTGGAGTCCATCGTCTGTGGTCACACAAGGCCTACAAGGCCAA 2666290 Query 108402 CGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCC 108461 ||| || | | |||||| ||| ||| ||| |||| ||||||| |||| Sbjct 2666289 GCTGCCGCTCCGCATCTTCCTGATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTG 2666230 Query 108462 GCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACA 108521 | | ||| | ||||||| | || |||||||||| | | ||||| ||||| || || Sbjct 2666229 GGAATGGACCCGCGATCACCGTGTCCACCACAAGTTCACCGACACCCACGCCGATCCCCA 2666170 Query 108522 CAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCC 108581 |||| || | || |||| ||| | ||| |||||||||| ||| | ||| |||| Sbjct 2666169 CAACTCCCGTCGCGGTTTCTTCTTCGCCCACATGGGATGGCTTATGTGCAAGAAGCACCC 2666110 Query 108582 CGACGTGA 108589 |||||||| Sbjct 2666109 CGACGTGA 2666102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 108781 CTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGAC 108840 ||| |||| || |||||||| || || || ||| | |||||| || | ||| Sbjct 2665838 CTCCACTTCACCTGGCTGGTGAACAGCGCCGCCCACTTCTACGGCATGAAGCCCTACGAT 2665779 Query 108841 AAGAACATTT-TCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATG 108899 |||| || | | | || | ||||| ||||| | | || | ||||||||||||| Sbjct 2665778 GTGAACGTTAGTGCGATGA-ACAACAAGCTGGTGTCCACCCTGACCATCGGCGAGGGATG 2665720 Query 108900 GCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||||||||||||||||| ||||||| ||||||||||| || ||| |||| Sbjct 2665719 GCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCTGAGCTGGG 2665669 >seq5059 Length=3196756 Score = 98.7 bits (108), Expect = 8e-16 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||| | || || ||||||||||||| ||||| || ||| || || || || || Sbjct 1397231 TGGGTTCGTGACCATCGGGTTCACCACAAATACTCGGAGACGGATGCTGATCCGCATAAT 1397290 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 |||||| | || |||| ||||| |||||||| ||||| |||||| |||| |||| || Sbjct 1397291 GCCAACCGCGGATTCTTCTTCTCCCACGTGGGCTGGCTGATGATGCTCAAGCACCCGGAA 1397350 Query 108586 GTGATCTCGGC--CGGTCGAAAAATGGACATGACGGACAT 108623 || |||| || |||||| |||| |||||| | || || Sbjct 1397351 GT--TCTCCGCCGCGGTCGTCAAATCGACATGTCTGATAT 1397388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747209292000