Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5218 232 7e-56 seq5008 107 2e-18 seq5215 104 2e-17 seq5076 98.7 1e-15 seq5017 87.8 2e-12 >seq5218 Length=3038582 Score = 232 bits (256), Expect = 7e-56 Identities = 502/740 (68%), Gaps = 17/740 (2%) Strand=Plus/Minus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 |||||||||||||| |||||||| | | || ||||| ||| | ||| | || | Sbjct 2802548 TGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAG 2802489 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 || || |||||||||||||| || | |||||||| || | ||| || ||||| ||| Sbjct 2802488 GGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCC 2802429 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 ||||| | || || | | || || | ||| ||||||| | | ||| ||| Sbjct 2802428 ACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCC 2802369 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || | | ||| || | ||||||||||||||| | | ||| |||| | ||| Sbjct 2802368 CAAAGATCTGTCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGA 2802309 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || || || | || ||| ||||||| | ||||||||||||||| || || || || Sbjct 2802308 CTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGG 2802249 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCG 153386 || ||| |||| |||||||| ||| |||| || | | | || || ||||| ||| Sbjct 2802248 GCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCG 2802189 Query 153387 TACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGT 153446 || || |||| || | | ||||| ||||||||||| | |||| ||| || || Sbjct 2802188 TAGGGATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGA 2802129 Query 153447 CGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGA 153501 |||||| | ||| || ||||| || || |||| || || ||| | Sbjct 2802128 CGATGCCTTAAATTGGACTTCTTGGCCTC-CG---GCAGTGGG-TAAAAGTTTATATCTA 2802074 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 | || || |||||||| | ||||| || || | | ||||||| || | ||| |||| Sbjct 2802073 TTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCAT 2802014 Query 153562 AGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATAGACGCCAGATTACAGACG 153620 | || |||| || |||| || | || | || || || |||| ||| || || Sbjct 2802013 ATGT--TTTC-TC-TGGCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACT 2801958 Query 153621 GCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTAT 153679 || |||| || |||| | ||||| || || || | ||| || || |||||||| || Sbjct 2801957 GCAATCTCGTCGGGCGAAG-AGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAAT 2801899 Query 153680 GACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739 | ||||| || || || ||||| || || ||||||||||| |||||||||||||| || Sbjct 2801898 GGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGG 2801839 Query 153740 TCCGCCGGTCTCGACTTGCG 153759 ||| ||||| ||||||| Sbjct 2801838 ATTGCCAGTCTCCACTTGCG 2801819 >seq5008 Length=644625 Score = 107 bits (118), Expect = 2e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||||| || ||||| | | |||||||| || |||||||||||| Sbjct 342989 GCCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGA 342930 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| |||||||| || || || || Sbjct 342929 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 342870 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 342869 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGAC 342810 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | || || |||||||| || || || || ||||||||| || Sbjct 342809 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 342758 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 342761 GCCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 342702 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || |||||| || || || |||| |||| |||||||| || || || || Sbjct 342701 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 342642 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 342641 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGAC 342582 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || |||||||| || || || ||||| ||||| Sbjct 342581 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 >seq5215 Length=2160492 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 1797509 CCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797568 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| | |||||| ||||| || || Sbjct 1797569 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797628 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || ||| | | || | ||| |||| | ||||||| Sbjct 1797629 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACC 1797688 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| ||||||| ||||| ||||| |||||||| Sbjct 1797689 TCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | ||||||||||||| |||||||| ||| Sbjct 1797053 CCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAG 1797112 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| | |||||| ||||| || || Sbjct 1797113 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797172 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| | ||| ||| Sbjct 1797173 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797232 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||||| || || || || |||||||| Sbjct 1797233 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || || || | | | |||||||| || |||||||||||| Sbjct 1797281 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797340 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| |||| | |||||| ||||| || || Sbjct 1797341 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797400 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| | ||| ||| Sbjct 1797401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797460 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || |||||||||| || || || || |||||||| Sbjct 1797461 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5076 Length=596799 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 35316 CCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 35257 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| | |||| |||||||| || || || || Sbjct 35256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGG 35197 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| ||| || || | | || | |||||| | | ||| ||| Sbjct 35196 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACC 35137 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 |||| || | || || ||||| || ||||| || || || ||||||| Sbjct 35136 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATGG 35088 >seq5017 Length=1730897 Score = 87.8 bits (96), Expect = 2e-12 Identities = 203/301 (67%), Gaps = 5/301 (2%) Strand=Plus/Plus Query 57148 TTGCCGGTGGTCTTGCTCAGCGGATGTTCGGTGAGGCCGAGATCGTCGCGCTTCG-CGTG 57206 ||||| |||| |||||||||| ||| || ||| | ||||||| || ||| |||| Sbjct 722712 TTGCCAGTGGACTTGCTCAGCTCGTGTCCGCCCTTGCCCAAATCGTCG-GCATCGGCGTG 722770 Query 57207 AACCACCAGACTGCGGCCGACGACGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGAT 57266 || |||| | | || || | || ||||| | ||||| || || ||| |||| | Sbjct 722771 GACGACCACAGTACGTCCAATGATGCTATCGGCACCGAACAGAGTGATCTTAGAGTCGCT 722830 Query 57267 CTTGTCCACTTCGGTGAGGGCGTTGGACACTTTGGCCTCGACGTTGCCCAAGTCGCCGAC 57326 || || | |||| |||| | | || | ||||| | ||| ||||| ||||| | Sbjct 722831 GATGGTGACCTTGGTG-GGGCAATCGCCAGTA--GCCTCAATGTTTCCCAAATCGCCCAA 722887 Query 57327 GTGCCGCACGGCCGCGTTGGGAGCGCCGTGTTCGCTGCCGGTGGGGTTAAAGTGCTCGCC 57386 ||| || | || || || ||||| || ||||| ||||| || || || Sbjct 722888 GTGGCGGTTCTCATCGCCAGGGGCACCGTGCTCCTTGCCGTGTGGGTTGAAATGAGGACC 722947 Query 57387 CGCCGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAACGTGAAATCCGTGCAGGCC 57446 | ||| ||||||||||| || |||| || |||||||| || || || |||||||| || Sbjct 722948 AGAGGACATGCAGCCGTTGGTGTTGTCACCAAACTCGTGCACATGGAAGCCGTGCAGACC 723007 Query 57447 C 57447 | Sbjct 723008 C 723008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496228281960000