Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5218 174 1e-38 seq5008 134 1e-26 seq5215 120 3e-22 seq5076 111 1e-19 >seq5218 Length=3038582 Score = 174 bits (192), Expect = 1e-38 Identities = 620/948 (65%), Gaps = 42/948 (4%) Strand=Plus/Minus Query 146062 TGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAAC 146121 ||||||||||| || |||||||| | ||| ||||| || ||| | || | || | Sbjct 2802548 TGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAG 2802489 Query 146122 GGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCC 146181 |||||||| || ||||| ||||| | || || || |||| || || ||||| ||| Sbjct 2802488 GGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCC 2802429 Query 146182 ACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTC 146241 |||| | |||||||| || || ||| ||| || ||| || |||| ||| Sbjct 2802428 ACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCC-----TTCAGACCT-TTC 2802375 Query 146242 CA---CAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCG---CGG 146295 || | || |||| || || ||| | ||||||| |||| | | || | | Sbjct 2802374 CAGTCCCAAAGATCTGTCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTG 2802315 Query 146296 AACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGCCAGTTCGCAGCTA 146355 | | || || || || | |||||| | ||||| | | |||||||||||| || Sbjct 2802314 ACC---GGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTG 2802258 Query 146356 GCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTGGCCTCC 146415 |||||||| || |||||| ||||| || |||| | ||| | | ||||||||| Sbjct 2802257 GCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCC 2802198 Query 146416 TCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGAC 146474 ||||| ||||| |||||| || | ||| | | ||||| || |||||||| | |||| Sbjct 2802197 TCGCTTTCGTA-GGGATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGAT 2802139 Query 146475 ACCAACGGGGCGGTG---TTTCTTGTTACTGTTCGCAGCGCCCGCAGTGGGATAGTGGTT 146531 |||| || || || | ||| | || || | || |||||||| || ||| Sbjct 2802138 GCCAATAGGACGATGCCTTAAATTGGACTTCTTGGC--CTCCGGCAGTGGG-TAAAAGTT 2802082 Query 146532 GCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGAC 146591 | || || ||||| ||||| || | | || | || || | || ||| Sbjct 2802081 TATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTT 2802022 Query 146592 ATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 ||||| ||||||| | | || | || || |||||| ||||| || ||||| || Sbjct 2802021 GAAGTCATATGTTTT--CTCTGGCG-TCACAAACATGTTGAGAGCGATCGATGCCAAATT 2801965 Query 146652 ACATACGGCAGTCTCGTCCTTGTCG--CAATACTGCACAATCTCGGCGCAGAGGTTGCTG 146709 || || ||| ||||||| | || | |||| ||||| || | ||| || || ||| Sbjct 2801964 GCAAACTGCAATCTCGTC--GGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTG 2801907 Query 146710 CACTTGATGATGCCCAAAtttttttGGTTACTAAACTT---GTTGCAGGGGTCCTTGTAG 146766 || || ||| |||||| || | |||||| || ||| |||||| | ||||||| || Sbjct 2801906 CATTTAATGGTGCCCACGTTCTGTTGGTTGCT---CTTTCGGTTGCACGCGTCCTTGAAG 2801850 Query 146767 AGCATGTACGGTCCCCCGGTTTCGACATTGGTCTCGACGATGAATCTAAACA-AATCTCT 146825 |||||||| || || || || || | | ||| | |||| | || || || || Sbjct 2801849 AGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGATG--GCGAACCACAAGGACT 2801792 Query 146826 G-GCCTTTACTTGTC-TTTCGTACAGTTTATTCTTTTCGTATTTCTCGTACAATATTTCA 146883 | || ||||| || || | | || | || |||||||||| | || | ||||| Sbjct 2801791 GTGCTTTTACAGTTCGGTTTGCGC-GTCCCTCCTGTTCGTATTTCACATATAGCTTTTCA 2801733 Query 146884 AAACTAGAACCGTACTCGTCGAGGAGGCCGGGATACTTTTTGGGACAGAACAGCGACCAT 146943 || | || || | || | || || || | || | ||||||||| |||||||| Sbjct 2801732 AACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAG 2801673 Query 146944 TCTTTATTCTCCTTCACGCGTTCCATAAACAAATCGGGAATCCAAAGG 146991 || | ||| ||| ||| |||| ||| || | ||| || ||||| ||| Sbjct 2801672 TCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGG 2801625 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | |||| |||||| || | |||||||| || ||||| || || || Sbjct 2718268 GCACCACCACGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCA 2718327 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || ||||| || |||||| |||||| ||||||||||| ||| Sbjct 2718328 GAGAGGGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGA 2718387 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || || |||||| ||| | | || |||| | ||||| ||| |||| || Sbjct 2718388 GGAATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTC 2718446 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || | || | || ||||| || || || || || || |||||||| Sbjct 2718447 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5008 Length=644625 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | |||||||||||||| | || ||||| || || || ||||| ||| Sbjct 342991 GCGCCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCG 342932 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| || || ||||| || || ||| |||||| ||||||||||| || Sbjct 342931 GACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 342872 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || ||||||||||||||| ||| || ||||| | |||| ||| || | |||| Sbjct 342871 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCG 342812 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || || | ||| | || ||||| ||||| || || || || ||||||||| || Sbjct 342811 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 342758 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | |||||| || | || ||||| || || || ||||| ||| | Sbjct 342760 CCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342701 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || || ||| |||||| ||||||||||| || || Sbjct 342700 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342641 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | |||| ||| || | |||||| Sbjct 342640 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342581 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| ||||| || || || ||||| ||||| Sbjct 342580 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 >seq5215 Length=2160492 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 |||| ||||| | || | |||||| || | || ||||| ||||| || ||||||||| Sbjct 1797051 CTCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGG 1797110 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | ||||| ||| || ||||| ||||| ||| ||||||| |||||||| || || | Sbjct 1797111 AGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGG 1797170 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | ||||||||||||||| ||| || ||| | | || | |||||| | | ||||| Sbjct 1797171 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGA 1797230 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || || |||| || || || || |||||||| Sbjct 1797231 CCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 1797508 TCCACCACGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 1797567 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||||| ||| || ||||| ||||| ||| ||||||| |||||||| || || || Sbjct 1797568 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797627 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || |||| | |||| ||| || | ||| || Sbjct 1797628 GATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCAC 1797687 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||| || |||| ||||| ||||| |||||||| Sbjct 1797688 CTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCACAAAGATCTGCAT 1797735 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| Sbjct 1797281 CCACCACGCAGACGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 1797340 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| ||| ||||||| |||||||| || || || Sbjct 1797341 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797400 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | || | |||||| | | |||||| Sbjct 1797401 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797460 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || || || |||||||| Sbjct 1797461 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5076 Length=596799 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| ||| | || ||||| || || || ||||| || Sbjct 35316 CCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 35257 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || |||||| |||||||||||||| || Sbjct 35256 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGG 35197 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || || |||||| ||| || ||| | | |||| |||||||| | ||| || Sbjct 35196 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACC 35137 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| ||| | || ||||| || || ||||| || || || ||||||| Sbjct 35136 TCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATGG 35088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475468109320000