Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5218 219 4e-52 seq5215 100 3e-16 >seq5218 Length=3038582 Score = 219 bits (242), Expect = 4e-52 Identities = 706/1084 (65%), Gaps = 25/1084 (2%) Strand=Plus/Plus Query 123600 CAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAAT 123659 ||||| || || || | || |||||||||| ||| ||||| |||||| | || | ||| Sbjct 2801821 CAAGTGGAGACTGGCAATCCTTACATGCTCTTCAAGGACGCGTGCAACCGAAAGAGCAAC 2801880 Query 123660 CAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGC 123719 || ||| |||| || || ||||| |||||||| ||| | |||||| |||| ||| Sbjct 2801881 CAACAGAACGTGGGCACCATTAAATGCAGTAATCTGTGCACGGAAATTGTCGAGTACTCT 2801940 Query 123720 GATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAA-----TCGTTGCG 123774 |||| | | || || || |||||||| ||||| | || | || || Sbjct 2801941 TCGCCCGACGAGATTGCAGTTTGCAATTTGGCATCGATCGCTCTCAACATGTTTGTGACG 2802000 Query 123775 TC---GAAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAA 123831 | |||||| | | | ||| ||| ||| || | ||||| || || | | Sbjct 2802001 CCAGAGAAAACA-----TATGACTTCAAAAAGCTTAAGGAGGTCACAAAGACGGTGGCCA 2802055 Query 123832 AGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTA 123891 || | || || || || ||| | || ||||| || || ||| || ||| | Sbjct 2802056 GAAACCTCAATAAGATAATAGATATAAACTTTTACCCACTGCCGGAGGCCAAGAAGTCCA 2802115 Query 123892 ATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGC 123951 |||| | || | || | || | ||| |||| || |||| |||||| | | | Sbjct 2802116 ATTTAAGGCATCGTCCTATTGGCATCGGCGTTCAGGGTCTGGCTGACGCGCTGATTCTTA 2802175 Query 123952 TGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACG-CAAATAGCCGAAACA 124010 |||| || ||||||||||| || || | | ||||| | || || ||||| Sbjct 2802176 TGCGTTATCCCTACGAAAGCGAGGAGGCCAGCCT-CTTAAACCAACAGATCTTTGAAACC 2802234 Query 124011 ATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAA 124070 ||||| | || || |||| || || |||||||| || ||| ||||| | || ||| Sbjct 2802235 ATTTACTTTGGAGCCCTGGAAGCCAGTTGCGAACTGGCCCAAAGGGACGGCACCTATGAA 2802294 Query 124071 AGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACA 124130 | ||| | || || |||| || || ||| ||||||||||||||||| || || Sbjct 2802295 ACTTATGAAGGAAGTCCGGTCAGTAAGGGAATTCTGCAGTACGACATGTGGGATAAAACG 2802354 Query 124131 CCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGT 124190 |||||| || | |||||||||| | | | || | ||| | || || | | Sbjct 2802355 CCGACAGATCTTTGGGACTGGAAAGGTCTGAAGGAGTCCATCAAAAAACATGGAGTTAGA 2802414 Query 124191 AACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAAC 124250 ||||| || |||||||| ||||| || ||| | |||||||||||| | || || ||| Sbjct 2802415 AACTCCCTTTTGGTGGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAATAAC 2802474 Query 124251 GAATCCTTCGAGCCGTTCACTAACA---ATTTGTACGTGCGACGAGTGTTAGCCGGCGAT 124307 |||||||||||||| | || |||| |||| ||| |||| || | | ||||| Sbjct 2802475 GAATCCTTCGAGCCCTATAC-AACAAATATTTATAC--AAGACGCGTACTCTCTGGCGAG 2802531 Query 124308 TTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAA 124367 || |||||| | || ||||||||| || || ||| || | | |||||| || || Sbjct 2802532 TTCCAAGTGGTCAACCATCATTTGCTGAGGGATTTGACGGAGCTGGATTTGTGGGACGAT 2802591 Query 124368 AACATGCGCAACGAAATTAT-TGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCC 124426 ||||| || | || || | | || || || | | || || | || ||||| Sbjct 2802592 GACATGAAGAATCAGATCATATCCAGCAGG-GGATCCATTCAAAATATTGAATCAATTCC 2802650 Query 124427 GGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGA 124486 || | ||| | || |||||||| || |||||||| | |||| | |||| | Sbjct 2802651 ACAAAAGGTCCGAGACCTTTACAAAACAGTTTGGGAAATCTCAGTTAAATCAACAATTAA 2802710 Query 124487 AATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGC 124546 |||||||| || || || |||| | ||||| || || || || || | ||| || Sbjct 2802711 AATGGCCGCAGATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTTCAATATCCATGTGGC 2802770 Query 124547 GGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGC-GGACTCA 124605 || || | ||| | | || |||||| | || | |||| ||| || || | Sbjct 2802771 AGAGCCAAACTATGGAAAGCTCACATCCATACATTTCTACTCCTGGA-AAGCTGGTCTTA 2802829 Query 124606 AAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCG 124665 |||| || ||||| ||||| | || || || || ||| | |||||||| |||||||||| Sbjct 2802830 AAACCGGAATGTACTACTTGCGCACAAAGCCAGCTGCCAACGCCATTCAGTTTACCGTCG 2802889 Query 124666 ACAA 124669 |||| Sbjct 2802890 ACAA 2802893 >seq5215 Length=2160492 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||||||||| || | | ||| | || || ||||| ||||||||||| || |||||| Sbjct 1797052 TCCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGA 1797111 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 || ||| ||| || | || ||||| ||| | ||||| || |||||||| || || Sbjct 1797112 GAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGG 1797171 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||||| || || || || || || || | || | || | ||||||||||| ||||| Sbjct 1797172 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCGGAAGGCTCGA 1797230 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || || || || | || || || || || ||||| Sbjct 1797231 CCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451972124780000