Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5218 156 5e-33 seq5403 138 1e-27 seq5413 125 9e-24 seq947 84.2 3e-11 >seq5218 Length=3038582 Score = 156 bits (172), Expect = 5e-33 Identities = 899/1420 (63%), Gaps = 32/1420 (2%) Strand=Plus/Minus Query 115876 AACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCA 115935 ||||| || | ||| |||||| ||| || || || || || ||||| ||| | || Sbjct 2802533 AACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATTCG 2802474 Query 115936 TTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTG 115995 || ||||||| ||||| || || || ||||||||||| || |||| | |||| ||| Sbjct 2802473 TTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGTTT 2802414 Query 115996 CGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC 116055 | | || | ||| ||||| || | | |||||| | || | |||| Sbjct 2802413 CTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAA---AGATCTGTC 2802357 Query 116056 TCCCCCT---CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAAT 116112 | | ||||||| || |||| || || || | | || ||| ||| | Sbjct 2802356 GGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCATAA 2802297 Query 116113 GTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATAC 116172 || ||||| | ||| || | |||| |||| | || || || |||||| | || Sbjct 2802296 GTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAGTAA 2802237 Query 116173 ATTGTCTCAAAAATGCGA-GCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG 116231 || || ||||| || | | || | | || |||||| ||| || | | || | Sbjct 2802236 ATGGTTTCAAAGATCTGTTGGTTTAAGAGGCT-GGCCTCCTCGCTTTCGTAGG-GATAAC 2802179 Query 116232 GCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCA 116290 ||| || ||| | | || || ||||| || || |||| |||||| || ||||| || | Sbjct 2802178 GCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTTA 2802119 Query 116291 TATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGAT 116350 ||| ||||| || | || || ||||| || |||| || | | |||| || | Sbjct 2802118 AATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGGT 2802059 Query 116351 TTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTT 116410 || ||| || |||||||| || | |||||||| | | ||| | | ||||| Sbjct 2802058 TTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTT---TCTCTG 2802002 Query 116411 CATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTAT 116470 | ||| || | || ||||| || |||| ||| || || | |||| || Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 116471 CAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTT 116530 || |||||| | ||||||||| |||| ||| | ||||||||||||| ||||| || Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 116531 GATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 | || |||| ||| ||||| |||||| ||||||| || || | || |||||| || Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGC--GGCTGGCACAGTGGCGTTGGCTCGCCC 116648 | |||| | || || || ||| | | ||| ||||| ||| || || || Sbjct 2801821 GCGACTCAATGATGGCGAACC--ACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTCC 2801764 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTC-ACCCACAGCCTC-TGAGAGC 116706 ||||| ||||| || || || |||||||| || |||||| | || ||| || Sbjct 2801763 CTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACA-CATCATGA-AGT 2801706 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || || | |||||||| || ||||| | || |||| || || |||||| Sbjct 2801705 CCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATG 2801646 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 116826 ||||| ||||| ||||| || || |||| | ||| || ||| ||||| | || Sbjct 2801645 AAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCA 2801586 Query 116827 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 116886 ||| | |||| ||| || | | ||||| ||||| || || || || | Sbjct 2801585 GTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATG 2801526 Query 116887 GCGATTGACCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGC--CGTTGCGTTAA 116941 || | | ||| || | |||| |||| | ||||| | || |||| ||||| Sbjct 2801525 GCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTT--GTTAA 2801468 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 117001 | || | ||||| |||| | ||||| || ||| || || || | ||| || Sbjct 2801467 AGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTAC 2801408 Query 117002 TGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTG 117061 || || | | | |||| | | ||||||||| ||||| |||| ||||| | Sbjct 2801407 CCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGG 2801348 Query 117062 CGCACTCCGTGAGACTGCC--GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 |||| | | | | |||| | | |||| || || |||||||| | | | | ||| Sbjct 2801347 CGCATTGC-TCA-ACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAG 2801290 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 || || ||| | || || | ||| ||||| || || ||||| | ||||| Sbjct 2801289 AAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTG 2801230 Query 117180 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 |||| || | || | | | ||| ||||||| | ||| |||||||| || Sbjct 2801229 CGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCC 2801170 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 || || ||||||| || ||||||| ||||| |||||| Sbjct 2801169 ATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGT 2801130 >seq5403 Length=2915140 Score = 138 bits (152), Expect = 1e-27 Identities = 266/386 (69%), Gaps = 10/386 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||| || |||||||| |||||||| || || ||| ||||||| Sbjct 122336 GTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCAT 122277 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGACG 127350 |||| || || ||||| | ||| | ||| | || || | || | || || || Sbjct 122276 GAAATTGAAAGGATTCTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGCCG 122217 Query 127351 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 127410 |||| ||| | || ||||| | |||||| || ||||||| ||||| | || || Sbjct 122216 GTCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATT-CA 122158 Query 127411 TGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||| | ||||| || |||| ||| |||||||||||||| || || | ||| || Sbjct 122157 CGGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCG- 122099 Query 127470 GAATAGTGTCCACCCCAGGT--CTATTG--CGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 || || | ||| | || || || || | | || ||| | | ||||||||| Sbjct 122098 --ATGATGCGCTCCCGACGTGGCTTCTGGACG-AGATGCTGGAACATTAGCACAGCAAAG 122042 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || || ||||| | |||||| || || || |||||| |||||| ||||| Sbjct 122041 TCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATC 121982 Query 127586 AGACCCCGCTTCTTCAACCAGAAAAT 127611 ||||| |||||||||| |||||| || Sbjct 121981 AGACCTCGCTTCTTCAGCCAGAAGAT 121956 >seq5413 Length=1192065 Score = 125 bits (138), Expect = 9e-24 Identities = 174/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||| ||||| ||| | | || || || || ||||| | ||||||||| ||||| || || Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||| ||||||| ||||| | ||||| || || || || ||| || || ||||| || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||||||| | || ||||| | | | |||||| || ||||||| || Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 ||| ||| | | |||||| | |||||||||| | ||| ||||| ||||| | Sbjct 479916 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 479857 Query 176166 C 176166 | Sbjct 479856 C 479856 >seq947 Length=14288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 248/374 (66%), Gaps = 10/374 (3%) Strand=Plus/Plus Query 12698 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 12757 || ||| || || ||||| || || || | || |||||| | ||| ||||| || Sbjct 8085 CTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTTGGT 8144 Query 12758 CGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTG 12817 || || || | | | ||| | | | || || |||||||||||| || | || Sbjct 8145 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 8204 Query 12818 ATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 12876 || | || || || || |||||||| || | || | ||| |||| || || || Sbjct 8205 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 8263 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 12933 | ||||| |||||||| |||||||| | || || | | ||| |||| || | || Sbjct 8264 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 8320 Query 12934 CAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGG 12993 | || || || ||||| | ||||| ||||| || ||||| |||||||| | || Sbjct 8321 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 8380 Query 12994 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 13052 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 8381 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 8439 Query 13053 TTCCCCGTCCCTGG 13066 || || || || || Sbjct 8440 TTACCAGTGCCCGG 8453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613465021380000