Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5403 127 3e-24 >seq5403 Length=2915140 Score = 127 bits (140), Expect = 3e-24 Identities = 477/740 (64%), Gaps = 25/740 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||| || || ||||||||||| || |||| || || |||||||| ||| Sbjct 122327 CACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCATGAAATTGAA 122268 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 || ||||| || ||| ||| | || || | |||| | || ||| || || Sbjct 122267 AGGATTCTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGCCGGTCCGCAAC 122208 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 ||||||||||| ||||| || ||||| || || | || | ||||| | || Sbjct 122207 GAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATTCACGGGCAAGGC 122148 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || ||||||| ||||| || || || ||| | |||| ||| || || | Sbjct 122147 GTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCT-CGATGATGCGCT 122089 Query 159882 CGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCAC-GCAAAGTCGCAGTGC 159940 | | ||||| | | | | | || |||| || ||| |||||||||||||| Sbjct 122088 CCCGACGTGGCTT---CTGGACGAGATGCTGGAACATTAG-CACAGCAAAGTCGCAGTGA 122033 Query 159941 AGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGC 160000 || || ||||||| ||||| | ||||||||| | | | || || ||||| | || ||| Sbjct 122032 AGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGACCTCGC 121973 Query 160001 GGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCA 160060 || ||||| || |||| || || |||||| || ||||| ||||| ||||| ||| Sbjct 121972 TTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTACGGCAGCA 121913 Query 160061 AACGCCACGAGCCTCTCACCAAA----AGAGGCGTTGGTGTCAT-GGGTCCACCTTTTGG 160115 || || | || | ||| ||||| || | ||| | || | ||| | | Sbjct 121912 AAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATCCAGGCCAGC-----G 121858 Query 160116 CCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTG 160171 |||| || ||| ||||| | || |||||| || | ||| || |||| Sbjct 121857 CCCAATCGGCC----TTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAACAGGTAC 121802 Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231 || ||| | ||| | || ||| | || || |||||| || | ||| Sbjct 121801 TCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTGT 121742 Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCC 160291 || ||||| ||||| || || ||| || ||| | |||||| ||| |||||| Sbjct 121741 ACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGAACCTCC 121682 Query 160292 TGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCC 160351 || |||| | | | ||||||| | || || | || |||| || |||||||| ||| Sbjct 121681 TGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAGAAGGCC 121622 Query 160352 AACACGTGAGAGATGAAATG 160371 | |||||| |||||||| || Sbjct 121621 AGCACGTGGGAGATGAAGTG 121602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795100533080000