Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5218 136 9e-27 seq5076 134 3e-26 seq5215 129 1e-24 seq5008 127 5e-24 >seq5218 Length=3038582 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | ||| | || |||||||| || | ||| ||||||| | || Sbjct 2718277 CGAAGGCGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTA 2718336 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| ||||||||||| || ||| ||||||| Sbjct 2718337 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCT 2718396 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||||| ||| || | | ||| || || | Sbjct 2718397 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGA 2718456 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || || || || || || Sbjct 2718457 GTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 2718494 >seq5076 Length=596799 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 35301 AGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCC 35242 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| ||||| ||||||||||| || || || |||||| ||| Sbjct 35241 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCC 35182 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || || | ||||| ||| Sbjct 35181 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTC 35122 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| || ||||| Sbjct 35121 TTGCCAGTGAGGGTTTTCACGAAGATTTG 35093 >seq5215 Length=2160492 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 1797296 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1797355 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | |||||||||||| || || || || ||| Sbjct 1797356 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1797415 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || |||| ||||| ||| Sbjct 1797416 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTC 1797475 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 1797476 TTACCAGTCAAGGTCTTCACGAAGATCTG 1797504 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||||||||||| |||||| || | | || | ||||| Sbjct 1797068 AGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCC 1797127 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | |||||||||||| || || || || ||| Sbjct 1797128 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 1797187 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | |||||| | | || || |||| ||||| ||| Sbjct 1797188 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTC 1797247 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | || ||||| || || || Sbjct 1797248 TTACCAGTCAAGGTCTTCACGAAGATCTG 1797276 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| |||| ||||||||| | | || | ||||| Sbjct 1797524 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 1797583 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| | |||||||||||| || || || || || Sbjct 1797584 TCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 1797643 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| ||| || | | || || ||||| ||||| || Sbjct 1797644 TGGATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTT 1797703 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || | ||||||||||| || || |||||| Sbjct 1797704 TTTCCAGTCAAGGTTTTCACAAAGATCTG---CATTTT 1797738 >seq5008 Length=644625 Score = 127 bits (140), Expect = 5e-24 Identities = 161/221 (73%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| ||||||||| | || || | ||| || Sbjct 342745 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 342686 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| ||||||||||| || || || || || ||| Sbjct 342685 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCC 342626 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||| || | | || || || | ||||| ||| Sbjct 342625 TGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTC 342566 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTAGC 199638 || || || || || ||||| |||||||| |||||| || Sbjct 342565 TTGCCAGTCAGGGTCTTCACGAAAATTTG---CATTTTGGC 342528 Score = 109 bits (120), Expect = 1e-18 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| |||||||| |||| ||||||||| | || || | ||| || ||||||||||| || Sbjct 342959 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCC 342900 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||||||| ||||||||||| || || || || || ||||| ||||| ||| Sbjct 342899 GGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 342840 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| |||| ||| || | | || || |||| ||||| ||||| || || || || Sbjct 342839 GACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 342780 Query 199612 TTTCACAAAAATTTG 199626 || || || || || Sbjct 342779 CTTGACGAAGATCTG 342765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178838522868500