Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq5008 156 5e-33 seq5215 147 2e-30 seq5076 120 3e-22 seq5218 102 9e-17 >seq5008 Length=644625 Score = 156 bits (172), Expect = 5e-33 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||||| |||||| || |||||| ||||| ||||||||||| || ||||| | Sbjct 342977 ACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 342918 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| |||| |||||||| || | || | || |||||| Sbjct 342917 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTT 342858 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| || | | || ||| | || || |||| ||||| Sbjct 342857 GTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGAT 342798 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || || ||||| ||||| Sbjct 342797 GGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 342762 Score = 136 bits (150), Expect = 4e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | ||||| || | || |||||| ||||| |||||||||| Sbjct 342762 TGCCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 342703 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || ||||||||||||||||| |||| |||||||| || | | Sbjct 342702 ACAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 342643 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| |||||| ||||| || | | || ||| | || | Sbjct 342642 GGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGA 342583 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||| ||||| || || || || |||||||||||| Sbjct 342582 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATTTTG 342530 >seq5215 Length=2160492 Score = 147 bits (162), Expect = 2e-30 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 1797544 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1797603 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || ||||||||| |||||| |||| | Sbjct 1797604 GATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCTTTGACGTT 1797663 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || ||| | ||||| |||| ||||||||||| || |||| ||||| || Sbjct 1797664 CTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTTCCAGTCAAGGTTTTCAC 1797723 Query 46582 AAAGATTTGCATTTTG 46597 |||||| ||||||||| Sbjct 1797724 AAAGATCTGCATTTTG 1797739 Score = 132 bits (146), Expect = 5e-26 Identities = 145/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| || ||||| | || ||||||||||| |||||||| Sbjct 1797316 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1797375 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 1797376 GATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1797435 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | || || |||| |||||||| || || |||| || || || Sbjct 1797436 CTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCAC 1797495 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 1797496 GAAGATCTGCATT 1797508 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| ||||| || ||||| | || ||||||||||| |||||||| Sbjct 1797088 CTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 1797147 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | || |||||||||| |||||| ||| | | Sbjct 1797148 GATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 1797207 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| | || || |||| |||||||| || || |||| || || || Sbjct 1797208 CTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCAC 1797267 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 1797268 GAAGATCTGCAT 1797279 >seq5076 Length=596799 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||||||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 35305 ACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 35246 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| || |||| |||||||| |||| || | | || || Sbjct 35245 ATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTT 35186 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||| | || | | ||||| | || || || | ||||| Sbjct 35185 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGAT 35126 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || ||||| || ||||||||||| Sbjct 35125 GGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5218 Length=3038582 Score = 102 bits (112), Expect = 9e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| ||||| ||| |||||| || || || ||||| || || || || | Sbjct 2718283 CGCAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCA 2718342 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| ||||| |||| |||||||| || | || | | || ||| Sbjct 2718343 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 2718402 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| |||| | | | || || || ||| || || | |||||| Sbjct 2718403 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 2718462 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || |||||||| || || ||||| ||||| ||||| ||| Sbjct 2718463 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 2718501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565199539860000