Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5403 398 8e-106 seq5008 156 4e-33 seq5076 149 6e-31 seq5215 134 1e-26 seq5218 123 2e-23 >seq5403 Length=2915140 Score = 398 bits (440), Expect = 8e-106 Identities = 590/829 (71%), Gaps = 8/829 (1%) Strand=Plus/Minus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || || || |||||||| || ||||| || || || || || |||| || || | | | Sbjct 122338 TGGTACTCTCCCACCTTCTTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCC 122279 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || |||| || || || ||||||||| || | || ||| || || || ||| Sbjct 122278 ATGAAATTGAAAGGATTCTTGGTGTTGTAGATTTTCCCGACGCCCAGCTCTACCAGTAGC 122219 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | ||| || ||||| ||||||||||| ||||| ||||| || | || | || | | Sbjct 122218 CGGTCCGCAACGAATTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATTC 122159 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || |||| || || ||||| || || || ||| | || |||||| || ||| || Sbjct 122158 ACGGGCAAGGCGTCTGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATCTCG 122099 Query 132847 CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGTC 132905 | | |||| || | ||| || || | ||||| |||||| | ||| ||||||||| Sbjct 122098 ATGATGCGCTCCCGACGTGGCTTCTGGACGAGATGCTGGAACATTA-GCACAGCAAAGTC 122040 Query 132906 GCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAG 132965 ||| || | ||| ||||||||||| || || |||||| ||| |||| || ||||| || Sbjct 122039 GCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAG 121980 Query 132966 GCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGAC 133025 || || || || ||||| || |||| |||||| || || ||||||| ||||| || Sbjct 121979 ACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTAC 121920 Query 133026 GGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT-CTTTGCTGGCGATCCAGCGCA 133084 ||| || ||||| | | |||||| || || |||| ||||| || ||||||| || Sbjct 121919 GGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGA-GGAGATCCAGGCCA 121861 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 ||||||| |||||||| || || |||||||||||| ||||| || ||| | | | Sbjct 121860 GCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC--AGGTA 121803 Query 133145 GTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 | | || | ||| | | | ||| ||||||||||| ||||| |||||||| Sbjct 121802 CTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTG 121743 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 |||||| |||||||||||||| ||||| ||||| || || ||||| ||||| || || Sbjct 121742 TACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGAACCTC 121683 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 ||| ||| ||||| |||||||| ||||| || || || ||| || || || ||||| Sbjct 121682 CTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAGAAGGC 121623 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 ||||||||| |||||| ||||| || | ||| || | ||| | ||| ||| || Sbjct 121622 CAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTAAGATC 121563 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTT 133431 |||||| ||||||||||||||||| ||||| || || || || || ||| Sbjct 121562 CTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTT 121514 >seq5008 Length=644625 Score = 156 bits (172), Expect = 4e-33 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| |||| |||||| || Sbjct 342531 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 342590 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | |||| | || | || |||| ||||| ||||| || ||| | || Sbjct 342591 TCCGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGA 342649 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| |||||||| |||| |||||||| |||||| Sbjct 342650 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTA 342709 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| | || || || |||||||| ||| Sbjct 342710 CAACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGT 342749 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| || || Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| ||||| || ||| | || || Sbjct 342822 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 342880 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| |||| |||||||| ||||||||| Sbjct 342881 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 342940 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||||||||| ||||| || | |||||| Sbjct 342941 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGGC 342989 >seq5076 Length=596799 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || ||| | | Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| |||||||| || || ||| |||| || Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAG 35209 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 35210 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 35269 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| |||||| ||||||| ||| || | || || Sbjct 35270 ATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGG 35316 >seq5215 Length=2160492 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || ||||| | || || |||||||||||| | || || ||| || Sbjct 1797738 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCC 1797679 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | |||| | |||| || |||| ||||| ||||| || ||| | || Sbjct 1797678 TCCGATACCATCGAGAACG-TCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 1797620 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | || | ||| || || ||||| || || | ||||||||| |||||| Sbjct 1797619 CCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTA 1797560 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| || || ||||| || ||| || | || || Sbjct 1797559 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGTGGTGG 1797509 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || |||||||| | || |||||| | | Sbjct 1797508 AATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTC 1797449 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | || |||| ||||| ||||| || ||| | |||| Sbjct 1797448 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 1797390 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || ||||| || || | ||||||||| |||||||| Sbjct 1797389 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACA 1797330 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || || ||||| || ||| || | || || Sbjct 1797329 ACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGTCTGCGTGGTGG 1797281 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || || || |||||||| | || |||||| | || Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 1797219 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1797161 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || ||||| || || | ||||||||| ||| ||||| Sbjct 1797160 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAA 1797101 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | || || || |||||||| ||| || | || || Sbjct 1797100 CATCCAAAAGGAGTCAACTCTTCACTTGGTGCTACGTCTGCGCGGAGG 1797053 >seq5218 Length=3038582 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| | Sbjct 2718500 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2718441 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | ||| | |||| || || | |||||||| |||||||| | || Sbjct 2718440 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2718381 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | || |||||| ||||| Sbjct 2718380 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTAT 2718321 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| || ||||| | || |||| ||||||||||| Sbjct 2718320 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCG 2718283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500138413120000