Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq1218 91.5 2e-13 seq3593 84.2 3e-11 seq3202 84.2 3e-11 seq1279 84.2 3e-11 >seq1218 Length=8613 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62900 CATAACTAGCGATATTAAACGCCAATCCAAGGAAGGTGTCAACACTTCGCTGATACCAAG 62959 ||||||||||||| ||||||| | ||||||||| |||| |||| ||||||||| | Sbjct 2000 CATAACTAGCGATGTTAAACGGAACTCCAAGGAAAATGTCGCCACTCCGCTGATACAACT 1941 Query 62960 TCAAATTCAGACGTCCAGCTTTCACACTGAATCGGAACAGAACGTGACACGGCGGCAGTG 63019 || |||| ||| | || || ||| | |||| || |||||||| || |||| Sbjct 1940 GGCAACTCAGTTTTCCGTCGTTAACGTAAAATTGAAACATTACATGACACGGAGGGAGTG 1881 Query 63020 CCATATGAGGCAAGTCAACCGGATTCCAAGCACTGACGATATTACGACGACATTCTGGAT 63079 ||||| | ||| | |||||||| ||||| || || | || | | ||||||| Sbjct 1880 CCATACTTCCAATGTCTTCTGGATTCCAGGCACTTACAATCATTCGTCTTGAATCTGGAT 1821 Query 63080 TAGTCTTAAT 63089 || ||||||| Sbjct 1820 TATTCTTAAT 1811 >seq3593 Length=14824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 ||||| |||| || ||||||||||| |||||| | ||||||||||| ||||||||||| Sbjct 10296 TGGTGAGCCGGGAGGGACTCGAACCCTCGACCATTCGATTAAAAGTCGAATGCTCTACCA 10355 Query 191922 ACTAAGCTAACGGC 191935 ||| ||||| |||| Sbjct 10356 ACTGAGCTACCGGC 10369 >seq3202 Length=5929 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 191865 TGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAACT 191924 || |||||| || ||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 175 TGAGCCGTGGCGGGTTCGAACCGCCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACT 234 Query 191925 AAGCTAACGGC 191935 |||||||||| Sbjct 235 GAGCTAACGGC 245 >seq1279 Length=3602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 191865 TGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCAACT 191924 || |||||| || ||||||| |||||||| ||||||||||| ||||||||||||||| Sbjct 540 TGAGCCGTGGCGGGTTCGAACCGCCGACCCTCTGATTAAAAGTCAGATGCTCTACCAACT 599 Query 191925 AAGCTAACGGC 191935 |||||||||| Sbjct 600 GAGCTAACGGC 610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720680049840000