Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1253 196 2e-44 seq5218 107 8e-18 seq5358 87.8 7e-12 >seq1253 Length=3799 Score = 196 bits (216), Expect = 2e-44 Identities = 232/313 (74%), Gaps = 6/313 (2%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||| | | ||||| ||||||||||| ||||| || |||||||| ||||| ||||| || Sbjct 3368 GTTAGTCAAGCAGTTATTACTGTTCCTGCTTACTTTAATGATGCTCAACGTCAAGCTACC 3427 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || | ||||| || | ||||| ||||||||||||||||||| ||| Sbjct 3428 AAAGATGCCGGTAAAATTGCCGGACTTGATGTTAAAAGAATTATTAATGAACCTACTGCA 3487 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | || |||||||| ||| || |||||| | ||| |||||| || ||||| Sbjct 3488 GCTTCACTTGCATATGGTTTAGATAA---AAAAGACAAAGATGAAAAA---ATCTTAGTT 3541 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 | |||||| |||||||| ||| |||| |||||| ||| | | | ||||| || || Sbjct 3542 TATGATTTAGGTGGAGGTACTTTTGATGTTTCTGTCCTTGAATTAGGGGATGGAGTCTTC 3601 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATT 451612 |||| |||| ||||||||||| || |||| || || ||| | ||||| ||| Sbjct 3602 CAAGTTCTTTCAACTAATGGTGATACCCACTTAGGTGGAGATGATTTCGATAAGAGAATC 3661 Query 451613 GTGGAATGGTTGA 451625 |||| ||||||| Sbjct 3662 ATGGACTGGTTGA 3674 >seq5218 Length=3038582 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| | || Sbjct 2718497 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 2718438 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 2718437 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 2718378 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 2718377 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTATAAC 2718318 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || | ||||| || Sbjct 2718317 ATTCAGAAGGAGTCTACCTTGCACTTGGT 2718289 >seq5358 Length=3330258 Score = 87.8 bits (96), Expect = 7e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||| |||||||| ||||| || || || || ||||| || || ||||| || || Sbjct 2926409 GTTAAAGATGCAGTGATTACGGTGCCAGCGTACTTCAACGACAGCCAGCGGCAGGCGACC 2926350 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || ||||| || ||||| || || ||||| || || || || ||||| || || ||| Sbjct 2926349 AAGGATGCGGGCTCCATTGCAGGATTGAATGTCCTACGGATCATCAATGAGCCGACGGCA 2926290 Query 451433 GCTGCTCTAGCATATGGA 451450 |||||||| || |||||| Sbjct 2926289 GCTGCTCTGGCGTATGGA 2926272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975579173594000