Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5354 185 7e-41 seq1253 150 1e-30 seq5059 122 7e-22 >seq5354 Length=5555046 Score = 185 bits (204), Expect = 7e-41 Identities = 683/1060 (64%), Gaps = 15/1060 (1%) Strand=Plus/Plus Query 517258 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 517317 ||| || ||||| || ||||||||||| ||||| || || ||||| ||||||| || || Sbjct 1169000 GGCGGTAACATTGAGGATACCATTGGCGTCCAAGTCGAAGGTGACGTCAATTTTTGGCAC 1169059 Query 517318 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 517377 ||||| | ||||||||||| || || || ||||| ||||| || || || || Sbjct 1169060 GCCTCTGGGTGCAGGTGGGATGCCGGTCAGGTTGAATGTGCCCAGCACGTTGTTGTCCTT 1169119 Query 517378 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 517437 ||| | || || |||||||||| || ||||| || ||| || ||||| | || Sbjct 1169120 AGTCAGAGCACGCTCGCCCTCGAAAACCTGTATAGTCACCGCAGGCTGGTTATCGGCGTA 1169179 Query 517438 AGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGT 517497 ||||| ||| | |||||| ||| |||||||| |||| | || || | ||||| Sbjct 1169180 GGTTGTGAATGTTTTGGATTGTTTGCAAGGAATGCGGCTGTTGCGCTCGATTAGCTTGGT 1169239 Query 517498 CATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAAT 517557 ||| | ||||| || || || | || || || || |||| ||||| || || | | Sbjct 1169240 CATCACTCCACCAGCAGTCTCGATGCCCAGTGATAGCGGAGCCACATCCACCAGTAAGAC 1169299 Query 517558 AT-TTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCAT 517616 || || | | | || | | || |||||||||||| || ||||| || |||| Sbjct 1169300 ATCCTTTATCTGGCTGCTCTCGTCG-CCGGAAAGAATAGCTGCCTGTATAGCCGCTCCAT 1169358 Query 517617 ATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTG 517676 | || || |||||||||||||| | | |||||| | || || || || Sbjct 1169359 AGGCCACCGCTTCATCAGGATTGATGGACAGATTTAGGGTCTTTCCGCCAAAGAAGCCCT 1169418 Query 517677 AAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCA 517736 ||||| | | ||||| || || || | |||||||| || || ||||| ||||| | Sbjct 1169419 GCAGAAGATTTTGAACCTTGGGGATGCGGGTGGATCCTCCTACCAAGACAATGTCATGAA 1169478 Query 517737 CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC 517796 |||| ||| |||| || | |||| || | ||||| ||||| || || | Sbjct 1169479 TCTGTCCTTTGTCCATCTTGGCATCCTTTAGGGCCTTTTCCACGGGCTCCAGGGTATTGC 1169538 Query 517797 TAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAA 517856 || | ||| || | || ||||| |||| | | || | | | || Sbjct 1169539 GGAAGAGGTCGCCGCACAACTCCTCGAAACGGGCTCGGCTCACCTTGGTGTAAAAGTCGT 1169598 Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAG--TTTGAGTCGAAGAAGATAGTGCACG 517914 || ||||||| | ||||| ||||| | || | || | | || | | |||| || Sbjct 1169599 GACCCTCGAACAGGGCATCAATCTCAATGGAAGCCTCTGTGCTGGAGGACAAAGTG--CG 1169656 Query 517915 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--TCAAA 517972 || || ||||| ||| || | || | || | || | ||||| | || | Sbjct 1169657 CTTGGCGCGTTCGGCTGCAGTTCGAAGGCGTCTCAGAGC--GCGAGGATTGGTGCGCAGA 1169714 Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCAAA 518031 || | ||| | || | ||| || || || | || ||| || || || || ||||| Sbjct 1169715 TCCTTCTTAAACTTGCGCTTAAACTCCTCTGC-CAGATGGTTCACCAGTCGGTTGTCAAA 1169773 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG---TCCATC 518088 || || || |||| | ||| | || | ||| | | || | |||||| ||| || Sbjct 1169774 GTCCTCGCCACCCAGATGAGTGTCGCCGGCCGTGGACCGCACCTCGAAAAGAGATCCTTC 1169833 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | | ||||| | | ||||| || || || |||| ||||| || || ||||| Sbjct 1169834 GTCGATGGTCAAAATACTGACATCGAAAGTGCCGCCGCCCAAGTCAAAGATGAGCACATT 1169893 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 ||| | | || || || || ||||| || | ||| || ||||| || || || Sbjct 1169894 GCGCTCTCCCTTAAGATTCTTGTCGAGTCCATAGGCCAGAGCTGCGGCAGTGGGCTCGTT 1169953 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||||| | | ||||| | || || || ||| ||||| || ||||| || | || Sbjct 1169954 GATAATACGAAGGACATTTAATCCGGCGATGGCTCCGGCATCCTTGGTGGCCTGGCGCTG 1170013 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCA 518308 || ||||| || || ||||| || ||||| || |||||| Sbjct 1170014 GGAGTCGTTGAAGTAGGCAGGCACCGTAATGACTGCATCA 1170053 >seq1253 Length=3799 Score = 150 bits (166), Expect = 1e-30 Identities = 181/241 (75%), Gaps = 19/241 (8%) Strand=Plus/Minus Query 518072 ACTTGGAAAAGTCCATC------TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCA 518125 |||||||| | |||||| |||||| |||| || |||||| || || ||| Sbjct 3606 ACTTGGAAGACTCCATCCCCTAATTCAAG-GACAGAA-----ACATCAAAAGTACCTCCA 3553 Query 518126 CCCATATCAAAAA-TAAG-TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACG 518183 || | |||| ||| |||| | ||||| ||||||||| ||||||| | |||||| | Sbjct 3552 CCTAAATCATAAACTAAGATTTTTTCAT--CTTTGTCTT---TTTTATCTAAACCATATG 3498 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 ||| | ||| ||||| ||||||||||||||||| ||||| ||| || |||||| | | Sbjct 3497 CAAGTGAAGCTGCAGTAGGTTCATTAATAATTCTTTTAACATCAAGTCCGGCAATTTTAC 3438 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | |||||||| || ||||| | ||| | ||| ||||| || ||||||||||||||||| | Sbjct 3437 CGGCATCTTTGGTAGCTTGACGTTGAGCATCATTAAAGTAAGCAGGAACAGTAATAACTG 3378 Query 518304 C 518304 | Sbjct 3377 C 3377 Score = 107 bits (118), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 18/223 (8%) Strand=Plus/Minus Query 322163 GAAACATCTAAAGTCCCAGCTCCTAAGTCATAAACAATTACGTTACCACCAGtttttttA 322222 |||||||| ||||| || | ||||| |||||||| | || |||||| Sbjct 3573 GAAACATCAAAAGTACCTCCACCTAAATCATAAACTA-------------AGATTTTTTC 3527 Query 322223 TTCCATTTTTCACTTC---CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATT 322279 || ||| || || ||||||| |||||||| | |||||||| ||||||||||| Sbjct 3526 ATC--TTTGTCTTTTTTATCTAAACCATATGCAAGTGAAGCTGCAGTAGGTTCATTAATA 3469 Query 322280 ATTTTAAGAACATCTAAACCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCG 322339 ||| | |||||| | || ||||||||| | | ||| || ||||| | || || Sbjct 3468 ATTCTTTTAACATCAAGTCCGGCAATTTTACCGGCATCTTTGGTAGCTTGACGTTGAGCA 3409 Query 322340 TCATTAAAATATGCTGGTACAGTAATAACTGCTTTATTAATAG 322382 |||||||| || || || |||||||||||||||| | ||| || Sbjct 3408 TCATTAAAGTAAGCAGGAACAGTAATAACTGCTTGACTAACAG 3366 >seq5059 Length=3196756 Score = 122 bits (134), Expect = 7e-22 Identities = 448/702 (64%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 518012 GTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 || || ||||| || ||||| || || |||||||| | || | || | || | | | Sbjct 736822 GTGACTAGACGGTTGTCAAAGTCCTCGCCTCCCAAATGGGTGTCACCGGCAGTGGATTTG 736881 Query 518072 ACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATA 518131 || | ||| | || || || | |||| || | ||||| ||| || || |||| | Sbjct 736882 ACCTCGAAGATGCCGTCATCGATCGACAGAATGGACACATCGAAGGTGCCGCCGCCCAGA 736941 Query 518132 TCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCA 518191 || || || || || || || | || || || ||||| || |||| ||| Sbjct 736942 TCGAAGATGAGCACGTTGCGCTCGCCAACGGCCTTCTTGTCCAGACCGTAGGCAATGGCA 737001 Query 518192 GCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCT 518251 || || || || || || || || | || |||||| | || ||||| | || || || Sbjct 737002 GCGGCCGTGGGCTCGTTGATGATACGCAGAACATTCAATCCGGCAATGGTACCGGCGTCC 737061 Query 518252 TTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTT 518311 || || || || | || || ||||| || || || || ||||| || ||||| | || Sbjct 737062 TTGGTCGCCTGACGCTGAGAGTCGTTGAAGTAAGCTGGCACAGTGATGACGGCGTTGGTC 737121 Query 518312 ACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAA 518371 || || || | || || || || | ||||| || | | | ||| || || Sbjct 737122 ACAGTCTTGCCCAGGTAGGCCTCGGCGGTCTCCTTCATCTTGGTGAGGACCATCGAGGAG 737181 Query 518372 ATTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTA 518431 || | || ||| | | ||| |||| | || | || || | | || || Sbjct 737182 ATCTCCTCAGGGAAGAAGGTCTTCTTCTCATCCTTGTAGGTGACCTCGATCTTGGGCTTG 737241 Query 518432 TTACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCA 518491 |||| | | ||| | || ||||||| ||||| || || || ||| || Sbjct 737242 CCGTCAACGCTGACAACCTCGAAGGGCCAGTGCTTCATGTCGGACTGCACAGCAGAATCG 737301 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 | || | | ||||| | || || ||||| || || || | ||| || || || || Sbjct 737302 TCGAACTTGCGGCCAATGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCC 737361 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 | || | ||||| ||||| || |||||| | || || || || || | |||||| ||| Sbjct 737362 ACCTGGTTCTTGGCAGCATCGCCGATCAGACGCTCGGTGTCGGTGAAGGCAACATAGGAT 737421 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 || || || |||||||| ||||| || ||||| || ||||| || |||| || | || Sbjct 737422 GGTGTGGTACGATTACCCTGATCGTTGGCAATGATCTCAACCTTGCCATGCTGGAACACT 737481 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || || || | || || || ||||||||||||| |||| Sbjct 737482 CCCACGCAGGAGTAGGTGGTGCCCAAATCAATACCAACAGCA 737523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780549471883000