Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq947 114 2e-20 seq5218 111 2e-19 seq5403 105 8e-18 seq5413 96.9 4e-15 >seq947 Length=14288 Score = 114 bits (126), Expect = 2e-20 Identities = 275/407 (68%), Gaps = 12/407 (3%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 16031 ||||||||||||||||| || | |||||| | || || || || |||||||| || Sbjct 8176 TCAAAACCATCCATCTCAACCAGCATCTGGTTCAGTGTCTGCTCGCGCTCATCATT-GCC 8234 Query 16032 GGCATACC-ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 | || | ||| |||| || || || ||||||||||| ||||||||||||| || Sbjct 8235 GCCACCCATACCTGCACCACGATGGCGACCAACGGCATCAATTTCATCAATGAAGATAAT 8294 Query 16091 GCATG--GTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| | | ||||||| | | ||| || | || || ||||| || || ||| Sbjct 8295 GCAAGGAGCTGATTTT--TTACCCTGTTCGAACATGTCACGCACACGGGATGCACCAACA 8352 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || || ||||| |||||||||| | | | | || | | ||| || ||||| | ||| Sbjct 8353 CCTACGAACATTTCCACAAAGTCGGAACCAG-AGATGGTAAAGAACGGTACATTGGCTTC 8411 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| |||||||| ||||| | || || ||||| || || ||| ||| | || || | Sbjct 8412 ACCTGCAATGGCGCGGGCCAACAGGGTTTTACCAGTGCCCGGCGGCCCCACAAGCAGCAC 8471 Query 16268 ACCTCGTGGAATCTTGGCGCC--ACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 16325 ||| ||||| || |||| | | || | ||| || | || ||||||||| Sbjct 8472 GCCTTTGGGAATTTTACCGCCCAAGCGCGTAA--ACTTCTGTGGGTCTTTCAGAAAATCC 8529 Query 16326 ACAATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 || || || | | ||| |||| || | |||||||| | ||||| Sbjct 8530 ACGATTTCCTGAAGTTCCCCTTTAGCTTCATCAATCCCGGCTACATC 8576 >seq5218 Length=3038582 Score = 111 bits (122), Expect = 2e-19 Identities = 797/1269 (63%), Gaps = 55/1269 (4%) Strand=Plus/Plus Query 112085 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 ||| ||| | |||| || || ||||| ||||||||||||||||| |||| |||| | Sbjct 2801607 CCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGGCCAA 2801666 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGA 112204 || | ||||| || || ||||| |||| || || || |||| ||| || Sbjct 2801667 TGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGGGCGA 2801726 Query 112205 GGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCC 112264 ||||||||| || || || ||||| | || | || || | || || Sbjct 2801727 TGAGTTTGAAAAGCTATATGTGAAATACGAACAGGAGGGACGCGCAAACCGAACTGTAAA 2801786 Query 112265 AGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATAT 112324 ||| ||||| || || | |||| ||| |||||||| | || || || Sbjct 2801787 AGCACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAAGTGGAGACTGGCAATCCTTACAT 2801846 Query 112325 GCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAG 112384 ||| | ||| ||||| || |||| |||||| || ||| |||| |||| || || | Sbjct 2801847 GCTCTTCAAGGACGCGTGCAACCGAAAGAGCAACCAACAGAACGTGGGCACCATTAAATG 2801906 Query 112385 TTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAA 112444 || || || || ||||| | || | | || |||| || || || || Sbjct 2801907 CAGTAATCTGTGCACGGAAATTGTCGAGTACTCTTCGCCCGACGAGATTGCAGTTTGCAA 2801966 Query 112445 CCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGA 112504 | ||||| ||||||||| || || |||| ||||||| || ||| ||| | | Sbjct 2801967 TTTGGCATCGATCGCTCTCAACATGTTTGTGACGCCAGAGAAAA---CATATGACTTCAA 2802023 Query 112505 AAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAA 112564 ||| || | || || || || || || | | |||||| || | | || |||| ||| Sbjct 2802024 AAAGCTTAAGGAGGTCACAAAGACGGTGGCCAGAAACCTCAATAAGATAATAGATATAAA 2802083 Query 112565 TTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGG 112624 |||||||| | | || || || ||| | || || ||||| ||||| |||| Sbjct 2802084 CTTTTACCCACTGCCGGAGGCCAAGAAGTCCAATTTAAGGCATCGTCCTATTGGCATCGG 2802143 Query 112625 TGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAA-G 112683 || || ||||| || || | | |||||| | || || || || ||||| | Sbjct 2802144 CGTTCAGGGTCTGGCTGACGCGCTGATTCTT-------ATGCGTT--ATCCCTACGAAAG 2802194 Query 112684 CGA--AGG----------AAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTC 112731 ||| ||| ||| ||| | || ||||| || || || | || | Sbjct 2802195 CGAGGAGGCCAGCCTCTTAAACCAA----CAGATCTTTGAAACCATTTACTTTGGAGCCC 2802250 Query 112732 TTGAGGCGAGTTCGGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 | || || |||| || |||| | ||| || || | |||||||| | ||| || Sbjct 2802251 TGGAAGCCAGTTGCGAACTGGCCCAAAGG--GACGGCACCTATGAAACTTATGAAGGAAG 2802308 Query 112790 TCCAGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGGA---AGGTGAGACCAAGCTT 112844 ||| | ||| | ||| | || || | || |||||||| | ||| | ||| Sbjct 2802309 TCCGG--TCAGTAAGGGAATTCTGCAGTACGACATGTGGGATAAAACGCCGACAGATCTT 2802366 Query 112845 CACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 | |||||| | | ||| ||||| |||||| | | || || | ||| ||| Sbjct 2802367 ---TGGGACTGGAAAGGTCTGAAGGAGTCCATCAAAAAACATGGAGTTAGAAACTCCCTT 2802423 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 ||| |||| || ||||| ||||| || || || ||||| |||||||||| |||| ||| Sbjct 2802424 TTGGTGGCTCCGATGCCCACAGCATCGACTGCTCAAATTATGGGTAATAACGAATCCTTC 2802483 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || ||||| || || || || ||| ||| | ||| | || ||||| | ||| Sbjct 2802484 GAGCCCTATACAACAAATATTTATACAAGACGCGTACTCTCTGGCGAGTTCCAAGTGGTC 2802543 Query 113025 AACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGAT 113084 ||| | ||| | || || | | ||| | | | | ||| | | || |||||| || Sbjct 2802544 AACCATCATTTGCTGAGGGATTTGACGGAGCTGGATTTGTGGGACGATGACATGAAGAAT 2802603 Query 113085 CTCATGGTGAA-AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTA- 113142 | || | ||| || || |||||||||||||||| |||||| | | | Sbjct 2802604 CAGATCATATCCAGCAGG-GGATCCATTCAAAATATTGAATCAATTCCACAAAAGGTCCG 2802662 Query 113143 AGAAGTTGTACCGCACAGTTTGGGAAATCA-AGATGAAGGATGTCATTGACATGGCCGCA 113201 ||| || ||| ||||||||||||||| || | || | ||| | ||||||||| Sbjct 2802663 AGACCTT-TACAAAACAGTTTGGGAAATCTCAGTTAAATCAACA-ATTAAAATGGCCGCA 2802720 Query 113202 GATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAGTCCA 113258 ||||| ||| || || ||||| || || | || ||| ||| | | || | | Sbjct 2802721 GATCGCGGTGCGTTTATAGATCAGAGCCAGTCCTTCAA--TATCCATGTGGCAGAGCCAA 2802778 Query 113259 ACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGG 113318 || ||| |||||| | || || || | ||| ||||| ||||| ||||| || Sbjct 2802779 ACTATG-GAAAGCTCACATCCATACATTTCTACTCCTGGAAAGCTGGTCTTAAAACCGGA 2802837 Query 113319 ATGTATTAC 113327 ||||| ||| Sbjct 2802838 ATGTACTAC 2802846 >seq5403 Length=2915140 Score = 105 bits (116), Expect = 8e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| ||||| || |||| ||||| || ||||| ||||||||| ||| ||| Sbjct 121889 CTTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTT 121948 Query 102233 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 102292 | | | || | ||||| |||||||||||||| ||||| ||||| |||||||||||| Sbjct 121949 CGCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGA 122008 Query 102293 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 102335 ||| ||||| | ||||| || || ||| || ||||| ||| Sbjct 122009 GCTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTGCTGTG 122051 >seq5413 Length=1192065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| || ||| | | || ||||| |||||||| | |||||||| ||||| || || Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 ||| || |||| |||| | ||||| || || || || || || || ||||| || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || | |||| || || | | | |||||| || || |||| || Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 ||| || | | ||| || | | |||| |||||||| || ||||| || |||| Sbjct 479916 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 479857 Query 176259 CC 176260 || Sbjct 479856 CC 479855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699723960000