Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5218 132 6e-26 seq5413 96.9 4e-15 seq947 96.9 4e-15 >seq5218 Length=3038582 Score = 132 bits (146), Expect = 6e-26 Identities = 576/901 (64%), Gaps = 40/901 (4%) Strand=Plus/Minus Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGA 110085 || || || ||||| || || || | ||||| | ||| || | ||| ||||| | Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAA 2802180 Query 110086 CCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145 | |||||| | | | || || ||||||||||| |||| ||||| || |||||| | Sbjct 2802179 CGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTT 2802120 Query 110146 ATGTTAGA-------GCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCG 110198 | || || || || ||||| ||||||||||| || || | | Sbjct 2802119 AAATTGGACTTCTTGGCCTCCGGCAGT-------GGGTAAAAGTTTATATCTATTATCTT 2802067 Query 110199 ATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTT 110258 |||||| || | | ||| ||||| |||| || | || || | | | || | ||||| Sbjct 2802066 ATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTT 2802007 Query 110259 CGTCT--CCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTC 110316 | ||| | | | |||| || |||||| || || || | |||||| || | | || Sbjct 2802006 C-TCTGGCGTCACAAACATGTT----GAGAGCGATCGATGCCAAATTGCAAACTGCAATC 2801952 Query 110317 TCGTCTTTGTCG--GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACAC 110374 ||||| | || | ||| || | ||||||||| |||| || | |||||| | Sbjct 2801951 TCGTC--GGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGC 2801894 Query 110375 CCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 ||| ||||| || || | ||| | |||||| || ||||| |||||||||| || | Sbjct 2801893 CCACGTTCTGTTGGTTGCTCTTTCG-GTTGCACGCGTCCTTGAAGAGCATGTAAGGATTG 2801835 Query 110434 CCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGC--GGCGGGGACAGTTG 110491 ||||| ||| || |||| | ||||| || ||| | | || |||||| Sbjct 2801834 CCAGTCTCCACTTGCGACTCAATGATGGCGAACC--ACAAGGACTGTGCTTTTACAGTTC 2801777 Query 110492 CGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACA 110551 ||| ||| | || |||| ||||| || || | | ||||| || | || ||| Sbjct 2801776 GGTTTGCGCGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACA 2801717 Query 110552 CATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 ||||| ||| || |||| ||||||||| || ||||| | || |||| | Sbjct 2801716 CATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCA 2801657 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | | |||||||| || || || ||||||| || |||| | |||||| ||| || Sbjct 2801656 CTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCT 2801597 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 |||| | || || || |||| ||| || | | |||||| ||||| || | Sbjct 2801596 CTTCCTTGCCAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCT 2801537 Query 110732 CGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTG 110788 | ||||| | || | || |||| || | ||| |||| | ||||| ||||| Sbjct 2801536 CTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCA 2801477 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAA 110848 | || ||||| || |||||||||| | |||| ||| || || || || | || Sbjct 2801476 CGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAA 2801417 Query 110849 TTCTGGACTTA---TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACT 110905 |||| || || |||||||| |||| || | |||||||||||| || ||| Sbjct 2801416 ---TGGAAGTACCCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACT 2801360 Query 110906 T 110906 | Sbjct 2801359 T 2801359 >seq5413 Length=1192065 Score = 96.9 bits (106), Expect = 4e-15 Identities = 171/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 167538 ATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTT 167597 ||||||||| ||| | | ||| ||||| || ||||| | |||||| || ||||| ||||| Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 167598 ATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTT-TCAGCGAGGGAAACTTCGC 167656 || || ||| ||| | | ||||| || ||||| || || || || || || || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 167657 CGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA--TCTC 167714 |||||||||| || | | || ||||| | | | |||||| || ||||||| |||| Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 167715 ATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGAGACC 167774 ||| | |||| || ||| || | |||| |||||||| || || || || || Sbjct 479916 -GCTTATCGTTTCTCTT-GAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCC 479859 Query 167775 ATC 167777 ||| Sbjct 479858 ATC 479856 >seq947 Length=14288 Score = 96.9 bits (106), Expect = 4e-15 Identities = 253/379 (67%), Gaps = 14/379 (4%) Strand=Plus/Plus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 || || ||| ||||||||||| || || || | || ||||| | ||| |||||| Sbjct 8082 AACCTGACGGTCGAAACGACCGGGCCGCAGCAATGCCGGGTCAAGCACATCCGGACGGTT 8141 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAG 11612 || |||||||| | | | ||| |||||| || ||||| ||||| || || Sbjct 8142 GGTGGCGGCAATCAGGATCACGCCT---TCATTGCTTTCAAAACCATCCATCTCAACCAG 8198 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACC-ACCTGCCGAACGCT 11671 | |||||| | ||||| || |||||||| ||| | || | |||||| ||| | Sbjct 8199 CATCTGGTTCAGTGTCTGCTCGCGCTCATCATTGCCGC-CACCCATACCTGCACCACGAT 8257 Query 11672 TCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGT--TGGTTGGC-ACGTG 11728 ||| || || ||||| ||||| ||||| | || || || || || || Sbjct 8258 GGCGACCAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC--- 8314 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 |||||||||| | ||||| ||||| || ||||||||||||||||| || || |||| Sbjct 8315 CCTGTTCGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGT 8374 Query 11789 TTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGA 11848 | |||| || ||| || ||||| | ||||| || ||||| || || | | Sbjct 8375 CGGAACCAGAGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACA 8434 Query 11849 GAGTCTTACCCGTACCAGG 11867 | || ||||| || || || Sbjct 8435 GGGTTTTACCAGTGCCCGG 8453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588935507900000