Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq5218 194 2e-44 seq1385 125 8e-24 seq5413 82.4 9e-11 >seq5218 Length=3038582 Score = 194 bits (214), Expect = 2e-44 Identities = 1097/1733 (63%), Gaps = 34/1733 (2%) Strand=Plus/Minus Query 105596 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTTG 105655 |||||||| ||||| || || || |||||| | ||| | ||| || || | |||||| Sbjct 2802845 TAGTACATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTT 2802786 Query 105656 GACATCGTTGGACTTT-CCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACC 105714 ||| ||| | || | ||| | ||| | || ||||| || || || ||| Sbjct 2802785 C-CATAGTTTGGCTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACC 2802727 Query 105715 ACGTTGTGCCGCCATATCAATGACATCCTTCATCTT-GATTTCCCACACTGTGCGGTAGA 105773 || | ||| ||||| | ||| | || | || ||||||||| ||||| ||| | Sbjct 2802726 GCGATCTGCGGCCATTTTAATTGT-TGATTTAACTGAGATTTCCCAAACTGTTTTGTAAA 2802668 Query 105774 GATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCA 105833 | | || | | ||| || | ||||||||||| || |||| || || | Sbjct 2802667 GGTCTCGGACCTTTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTG--CTGGAT-A 2802611 Query 105834 TGA---GATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGAT 105890 ||| ||| |||||| || | | ||| | | | | || | | | ||| | | | || Sbjct 2802610 TGATCTGATTCTTCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAAT 2802551 Query 105891 GCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGT 105950 | | |||||| | ||||| || | ||| | ||| ||| || || || || | Sbjct 2802550 GATGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTAT 2802491 Query 105951 AGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTG 106010 |||| || ||| |||| |||||||||| ||||| || || || ||||| ||||| || | Sbjct 2802490 AGGGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAG 2802431 Query 106011 CCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGT 106070 ||| |||||| ||| | || || | || |||||| ||||| ||| | | ||||| Sbjct 2802430 CCACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGT 2802371 Query 106071 CGTA--GTTGAGCTTG-GTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GA 106125 | | | | | | |||| | |||||||| || | || || | ||||| || Sbjct 2802370 CCCAAAGATCTGTCGGCGTTTTA---TCCCACATGTCGTACTGCAGAATTCCCTTACTGA 2802314 Query 106126 CGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGC 106185 | ||| || ||| | || ||||||| || | || |||| ||| || || || Sbjct 2802313 CC--GGACTTCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGC 2802256 Query 106186 CTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATC 106245 ||||||| | | || |||||||||||||| | || | |||| || || Sbjct 2802255 TTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTC 2802196 Query 106246 TGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACCTTGAACACCCAAAC 106304 || | | || || || || ||| | | || || ||||| ||||| || | | Sbjct 2802195 GCTTTCGTAGGGATAACG-CATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGC 2802137 Query 106305 CAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGT 106364 ||||||| | || | | ||| ||||| || | | || ||||| ||| | | Sbjct 2802136 CAATAGGACGATGCCTTAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATAT 2802077 Query 106365 CAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAAT 106424 | || | || || ||| ||| || ||||||||| || | ||| |||| | | Sbjct 2802076 CTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGT 2802017 Query 106425 CAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAA 106484 || | || ||||| | ||| || | || ||||| |||||||||||||||| Sbjct 2802016 CATATGTTT---TCTCTGGCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAA 2801960 Query 106485 CAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAA 106544 | || |||| || | |||||| | |||||| || |||| || | |||| Sbjct 2801959 CTGCAATCTCGTCGGGCGAAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAA 2801900 Query 106545 TCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGG 106604 | || |||| |||| |||||| |||||| ||||||||| |||||| |||||||||| | Sbjct 2801899 TGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAG 2801840 Query 106605 GCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGTACAA 106664 | | || |||||| || |||| | || || ||||| ||| |||| Sbjct 2801839 GATTGCCAGTCTCCACTTGCGACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAG 2801780 Query 106665 TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 106724 | ||| || ||||||||| ||||| || || || ||||||||| || ||| Sbjct 2801779 TTCGGTTTGCGCGTCCCTCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCC 2801720 Query 106725 CCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCT 106784 | | || || || || |||| ||||||||||| ||||| | || ||| Sbjct 2801719 ACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCT 2801660 Query 106785 CAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAG 106844 | || || |||||||| || ||||| |||||||||| | || | ||| | ||| Sbjct 2801659 CCACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGAT 2801600 Query 106845 CCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCCGCGTGCCAT 106903 |||||| | || | | || ||| || || ||||| | | ||||| ||||| Sbjct 2801599 GCTCTTCCTTGCC-AGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAG 2801541 Query 106904 GGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGC 106960 ||||| ||||| | || | | |||| || | ||| | |||| ||||| || Sbjct 2801540 GGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGT 2801481 Query 106961 GCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCC 107020 || | |||||| || | ||||| |||| | ||||| || || || || || Sbjct 2801480 GCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCG 2801421 Query 107021 CGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCAC 107080 | ||| || || || | | | ||||| | | |||||||| || || || Sbjct 2801420 CAAATGGAAGTACCCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGAC 2801361 Query 107081 TTTGAGATTTGCGCACACTCCGTAA--GAGTTCCATAGATACCGTTGATTGAGTCCTCCT 107138 || ||||| || || | | || || || ||||||| | || ||||| Sbjct 2801360 TTGGAGATCATGGCGCATTGCTCAACTGACTT--GAAGATACCCTCAATCGAGTCGGAAG 2801303 Query 107139 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGG 107198 | ||| | || || ||| || | ||| || | ||| |||| || || | Sbjct 2801302 TCATGGTCAGGAGAAAACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCG 2801243 Query 107199 TTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAAT 107258 |||| | ||||| |||| || | || | | || ||| ||||||| | ||| || Sbjct 2801242 TTGGCGAAGCGTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCAT 2801183 Query 107259 CAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGT 107311 | |||||||| || ||||| ||||| ||||| ||||||| ||||| |||||| Sbjct 2801182 CGATGTCTTCTCCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGT 2801130 >seq1385 Length=14403 Score = 125 bits (138), Expect = 8e-24 Identities = 278/411 (68%), Gaps = 12/411 (3%) Strand=Plus/Plus Query 9152 CTCGCGTCCCCGAACACTTGGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACG 9211 ||| || || |||||| ||| || | ||| || ||||| ||||| ||||||||||| Sbjct 4751 CTCTCGACCACGAACATCTGGTTGACCAACTAAAATTTTACGGTCAAATCGACCTGGACG 4810 Query 9212 AAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT 9271 | | || |||||| | |||| || || || ||||| ||||||| | ||| Sbjct 4811 AGTCAAAGCTGGATCAAGAACATCAGAACGGTTAGTTGCGGCAATGACAATGACACC--- 4867 Query 9272 TTCATTATC---AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9328 |||||| | |||||||||||| || || ||||| |||| |||||||| ||||| Sbjct 4868 TTCATTCCCTGTAAAACCATCCATTTCAACTAATAGTTGATTAAGGGTTTGTTCACGTTC 4927 Query 9329 ATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCA 9386 ||| | | || ||| || | | |||| ||| ||||||||||| |||||| Sbjct 4928 ATCGT--GACCGCCGCCCATTCCGGATCCACGTTTTCGTCCAACGGCATCAATTTCATCA 4985 Query 9387 ATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTG 9446 || |||| || |||| ||||| ||| |||| | ||| | ||||| | Sbjct 4986 ATAAAGATGATTGCTGGTGCATTTTTCTTGGCTTGGGCAAATAAATCTCTAACCCGGCTA 5045 Query 9447 GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGAT-GAAGGGGAC 9505 || || ||||| |||||||| || || || | || | | | | || || ||| || || Sbjct 5046 GCACCAACACCCACAAACATTTCAACGAAATCTGATCCAG-ATAATGAATAGAATGGAAC 5104 Query 9506 ATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||| | |||||| |||| ||| || || | |||||||| ||||| || Sbjct 5105 ATTTGCTTCACCAGCAACCGCTTTAGCTAGCAAGGTCTTACCGGTACCAGG 5155 >seq5413 Length=1192065 Score = 82.4 bits (90), Expect = 9e-11 Identities = 178/264 (67%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529 |||||| || ||| | | || ||||| || ||||| | || ||||| || |||||||| Sbjct 480095 ATCCTTGCCTCCCGTCAAGCGAGTACCGAACTGACCTCGTGGCTCAAGCAGATTAATGTT 480036 Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGT-GTCCGCTAAGGATACTTCAC 168588 ||| || ||| |||| | |||||| || || || || || || | || || || | Sbjct 480035 GTTGGAGCCCACATAGTTTTGTGCCAAATTCACGATAGTCATCTGC-AGTGAGACCTCTC 479977 Query 168589 CATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCAT 168648 | |||||||| || ||| | || || || | | | || || || ||||||| ||| Sbjct 479976 CGTGGTGGTAGGCCGACATCTCGGCCACTGAACCGGACAACTGGGCTACCTTCACTTCTC 479917 Query 168649 CCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCAT 168708 ||| || | | |||||| | |||| || || | ||| ||||| || |||| Sbjct 479916 GCTTATCGTTTCTCTTGAAGCAGGTGAACATGACCTTGCGCTGGCCGGGCTTCAGGCCAT 479857 Query 168709 CCGCCATATGGGCAATAGAGCGCT 168732 || | | | || ||| ||||||| Sbjct 479856 CCACAAGACTGGGAATGGAGCGCT 479833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589940238820000