Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5215 152 1e-31 seq5218 127 5e-24 seq5076 125 2e-23 seq5008 123 6e-23 >seq5215 Length=2160492 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| ||||| || |||||||||| || || | ||||| |||||||| Sbjct 1797076 GTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAGAGGGTGCGGCCATCCTCGAGCTG 1797135 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || |||||||| || ||||| || ||||| || || || Sbjct 1797136 CTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 1797195 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||||||||| ||| || || || || || | ||||| || || Sbjct 1797196 GGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGT 1797255 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 1797256 CAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 1797532 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1797591 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || |||||||| || ||||| || |||||||| || || Sbjct 1797592 CTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGGATCTT 1797651 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||||| ||||| || || ||||| || | ||| | || ||||| || Sbjct 1797652 GGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTTCCAGT 1797711 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 ||| ||||| || || | ||||||| Sbjct 1797712 CAAGGTTTTCACAAAGATCTGCATTT 1797737 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | ||||| |||||||| Sbjct 1797304 GTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGCTG 1797363 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || |||||||| || ||||| || ||||| || || || Sbjct 1797364 CTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 1797423 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||||||||| ||| || || || || || | ||||| || || Sbjct 1797424 GGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTACCAGT 1797483 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 1797484 CAAGGTCTTCACGAAGATCTGCATT 1797508 >seq5218 Length=3038582 Score = 127 bits (140), Expect = 5e-24 Identities = 153/207 (74%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || ||||| || || || | || || | |||||||| |||||||| || Sbjct 2718301 GTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATCTTCCAGCTGCTTGCCA 2718360 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 |||||||| || || || || ||||||||||| ||||||||||| ||||| || ||| Sbjct 2718361 GCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 2718420 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| ||||| ||| || ||||| || | ||||| || || | || Sbjct 2718421 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTC 2718480 Query 195124 TTTACGAACACTTGCATTTATGGTTAC 195150 || ||||| | ||||| | || |||| Sbjct 2718481 TTAACGAAGATCTGCATCT-TGATTAC 2718506 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 160575 GAGCCAGAGAGATTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAG 160634 ||||| | || | ||||| ||| | |||| | ||||| |||||||| ||||| | | Sbjct 2801603 GAGCCCGTGATTTGTTCTATGCCCTGTGGATACCAGATCTCTTCATGAAACGAGTGGAGG 2801662 Query 160635 ACAATGGGGATTGGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATG 160694 ||||| ||| ||| |||||||||||| | || ||||||||| ||||||| | | Sbjct 2801663 CCAATGAGGACTGGTCGCTTTTCTGTCCCCACAAATGCCCTGGACTTCATGATGTGTGGG 2801722 Query 160695 GTTCCGAGTTCGAGACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAA 160746 | ||||| || | || |||| | ||||||| | |||||| | || || Sbjct 2801723 GCGATGAGTTTGAAAAGCTATATGTGAAATACGAACAGGAGGGACGCGCAAA 2801774 >seq5076 Length=596799 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || ||||| || | ||| || | ||||| || Sbjct 35298 ACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCC 35239 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || || || || || || ||||||||||| || Sbjct 35238 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGGGGATACCTTCTTTGTCCTGG 35179 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| |||||||||||| || || || ||||| | ||||| Sbjct 35178 ATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAACCTCGAGGGTGATGGTCTTG 35119 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 35118 CCAGTGAGGGTTTTCACGAAGATTTGCAT 35090 >seq5008 Length=644625 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 342737 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 342678 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||| || || || || ||||| || || || Sbjct 342677 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATCTT 342618 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || ||||| | ||||| || || Sbjct 342617 GGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGT 342558 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 || || || ||||| | |||||||| Sbjct 342557 CAGGGTCTTCACGAAAATTTGCATTT 342532 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||||||||| || || || ||||| |||| || || | || || || |||||||| || Sbjct 342959 AGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTGCC 342900 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 |||||||| || || || || ||||| || ||||| || ||||| || || || ||| Sbjct 342899 GGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 342840 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||||||||| ||||| || || || || || ||||| | ||||| || |||| || Sbjct 342839 GACGTTCTCGATGGTATCGGAGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 342780 Query 195123 TTTTACGAACACTTGCAT 195140 || ||||| | ||||| Sbjct 342779 CTTGACGAAGATCTGCAT 342762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109403416218500